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@Teichlab

Teichmann Group

Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine

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  1. celltypist celltypist Public

    A tool for semi-automatic cell type classification

    Python 451 54

  2. cellhint cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Python 118 15

  3. drug2cell drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 100 4

  4. bin2cell bin2cell Public

    Join subcellular Visium HD bins into cells

    Python 132 13

  5. Genes2Genes Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 81 12

  6. cell2tcr cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 32 3

Repositories

Showing 10 of 76 repositories
  • celltypist Public

    A tool for semi-automatic cell type classification

    Teichlab/celltypist’s past year of commit activity
    Python 451 MIT 54 44 2 Updated Jan 31, 2026
  • gene2probe Public

    Pipeline for designing custom probes against human genes

    Teichlab/gene2probe’s past year of commit activity
    Jupyter Notebook 20 MIT 7 0 1 Updated Jan 30, 2026
  • cell2home Public

    Analyse cell homing and migration in single-cell datasets

    Teichlab/cell2home’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 29, 2026
  • sctk Public
    Teichlab/sctk’s past year of commit activity
    Python 45 GPL-3.0 8 1 1 Updated Jan 28, 2026
  • ega-meta-harvest Public

    Gather EGAF-EGAN-EGAX metadata for EGA data released from Sanger

    Teichlab/ega-meta-harvest’s past year of commit activity
    Python 0 0 0 0 Updated Jan 28, 2026
  • hash_custom_10x_probes Public

    Make unique hashes across custom 10X probe panels

    Teichlab/hash_custom_10x_probes’s past year of commit activity
    Python 0 0 0 0 Updated Jan 26, 2026
  • csd3-scripts Public

    Various utility scripts for CSD3 survival

    Teichlab/csd3-scripts’s past year of commit activity
    Python 1 0 0 0 Updated Jan 26, 2026
  • thymus-ageing Public
    Teichlab/thymus-ageing’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 7, 2026
  • celcomen Public
    Teichlab/celcomen’s past year of commit activity
    Jupyter Notebook 19 GPL-3.0 1 0 0 Updated Dec 10, 2025
  • celltypist_wiki Public

    Materials and scripts for building cell type encyclopedia table

    Teichlab/celltypist_wiki’s past year of commit activity
    Python 20 3 0 0 Updated Dec 2, 2025