github-actions.yml

name: Tests
on:
  push:
    branches: main
  pull_request:
    branches: main
jobs:
  minimum-version-testing:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.8']
    steps:
      - uses: actions/checkout@v3
      - name: Set Up Python
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: Display Python Version
        run: python -c "import sys; print(sys.version)"
        shell: bash
      - name: Generate Minimum Requirements File
        run: sed 's/>/=/g' requirements.txt | sed 's/$/\.*/g' > requirements.min.txt
        shell: bash
      - name: Install Minimum Requirements
        run: python -m pip install --upgrade -r requirements.min.txt
        shell: bash
      - name: Install STUMPY And Other Dependencies
        run: python -m pip install --editable .[ci]
        shell: bash
      - name: Run Black
        run: black --check --diff ./
        shell: bash
      - name: Run Flake8
        run: flake8 ./
        shell: bash
      - name: Link OpenMP
        run: |
             if [ "$RUNNER_OS" == "macOS" ]; then
                  brew link --force libomp
             fi
        shell: bash
      - name: Show Full Numba Environment
        run: python -m numba -s
        shell: bash
      - name: Run Unit Tests
        run: ./test.sh unit
        shell: bash
  unit-testing:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.8', '3.9', '3.10', '3.11']
    steps:
      - uses: actions/checkout@v3
      - name: Set Up Python
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: Display Python Version
        run: python -c "import sys; print(sys.version)"
        shell: bash
      - name: Install STUMPY And Other Dependencies
        run: python -m pip install --editable .[ci]
        shell: bash
      - name: Run Black
        run: black --check --diff ./
        shell: bash
      - name: Run Flake8
        run: flake8 ./
        shell: bash
      - name: Link OpenMP
        run: |
             if [ "$RUNNER_OS" == "macOS" ]; then
                  # Fix libiomp5.dylib
                  echo "Install OpenMP via Conda"
                  conda install -c intel -y openmp
                  echo "Checking $CONDA/lib for OpenMP"
                  ls $CONDA/lib/libiomp5.dylib
                  echo "Changing  @rpath for the omppool.cpython-x-darwin.so shared object to look in $CONDA/lib"
                  ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libiomp5.dylib $CONDA/lib/libiomp5.dylib
                  # Fix libomp.dylib
                  echo "Linking OpenMP into /usr/local/lib"
                  brew link --force libomp
                  echo "Checking /usr/local/lib for OpenMP"
                  ls /usr/local/lib/libomp.dylib
                  echo "Changing  @rpath for the omppool.cpython-x-darwin.so shared object to look in /usr/local/lib"
                  ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib /usr/local/lib/libomp.dylib
                  echo "Checking Numba OpenMP Access"
                  python -c "from numba.np.ufunc import omppool" 
             fi
        shell: bash
      - name: Show Full Numba Environment
        run: python -m numba -s
        shell: bash
      - name: Run Unit Tests
        run: ./test.sh unit
        shell: bash
  coverage-testing:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.8', '3.9', '3.10', '3.11']
    steps:
      - uses: actions/checkout@v3
      - name: Set Up Python
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: Display Python Version
        run: python -c "import sys; print(sys.version)"
        shell: bash
      - name: Install STUMPY And Other Dependencies
        run: python -m pip install --editable .[ci]
        shell: bash
      - name: Run Black
        run: black --check --diff ./
        shell: bash
      - name: Run Flake8
        run: flake8 ./
        shell: bash
      - name: Link OpenMP
        run: |
             if [ "$RUNNER_OS" == "macOS" ]; then
                  brew link --force libomp
             fi
        shell: bash
      - name: Show Full Numba Environment
        run: python -m numba -s
        shell: bash
      - name: Run Coverage Tests
        run: ./test.sh coverage
        shell: bash
      - name: Check Coverage Report
        run: coverage report -m --fail-under=100 --skip-covered --omit=setup.py,docstring.py,min.py,stumpy/cache.py
        shell: bash
      - name: Upload Coverage Tests Results
        uses: codecov/codecov-action@v3