@@ -12,18 +12,7 @@ This repository contains all source code in the reconstructor python package, im
1212#### /MEMOTE
1313Contains raw .html files for benchmarking scores for 10 representative reconstructor models
1414
15- To view rendered .html MEMOTE benchmarking scores for Reconstructor models and the corresponding ModelSEED/CarveME models, use the links below:
16- __ * Porphyromonas gingivalis:* __ [ Resonstructor] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/837.134.redo.html ) || [ ModelSEED] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/837.83MS.html ) || [ CarveME] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/837.83C.html )
17- __ * Bacillus amyloliquefaciens:* __ [ Resonstructor] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/1390.556.redo.html ) || [ ModelSEED] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/1390.556MS.html ) || [ CarveME] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/1390.556C.html )
18- __ * Citrobacter braakii:* __ [ Resonstructor] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/57706.84.redo.html ) || [ ModelSEED] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/57706.84MS.html ) || [ CarveME] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/57706.84C.html )
19- __ * Acinetobacter bereziniae:* __ [ Resonstructor] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/106648.24.redo.html ) || [ ModelSEED] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/106648.24MS.html ) || [ CarveME] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/106648.24C.html )
20- __ * Tropheryma whipplei:* __ [ Resonstructor] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/218496.4.redo.html ) || [ ModelSEED] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/218496.4MS.html ) || [ CarveME] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/218496.4C.html )
21- __ * Proteus mirabilis:* __ [ Resonstructor] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/529507.6.redo.html ) || [ ModelSEED] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/529507.6MS.html ) || [ CarveME] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/529507.6C.html )
22- __ * Clostridiodes difficile:* __ [ Resonstructor] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/699034.5.redo.html ) || [ ModelSEED] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/699034.5MS.html ) || [ CarveME] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/699034.5C.html )
23- __ * Campylobacter jejuni:* __ [ Resonstructor] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/1349827.3.redo.html ) || [ ModelSEED] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/1349827.3MS.html ) || [ CarveME] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/1349827.3C.html )
24- __ * Helicobacter pylori:* __ [ Resonstructor] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/1382925.3.redo.html ) || [ ModelSEED] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/1382925.3MS.html ) || [ CarveME] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/1382925.3C.html )
25- __ * Escherichia coli:* __ [ Resonstructor] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/2848143.3.redo.html ) || [ ModelSEED] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/2848143.3MS.html ) || [ CarveME] ( https://emmamglass.github.io/ReconstructorMEMOTE.io/2848143.3C.html )
26-
15+ See below in the __ Supplementary Model Checks and Analyses__ at the bottom of the README for links to stable .html renderings of the MEMOTE scores and comparisons to other automatic model generation tools
2716
2817#### /reconstructor
2918contains all package source code
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