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README.md

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@@ -12,18 +12,7 @@ This repository contains all source code in the reconstructor python package, im
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#### /MEMOTE
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Contains raw .html files for benchmarking scores for 10 representative reconstructor models
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To view rendered .html MEMOTE benchmarking scores for Reconstructor models and the corresponding ModelSEED/CarveME models, use the links below:
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__*Porphyromonas gingivalis:*__ [Resonstructor](https://emmamglass.github.io/ReconstructorMEMOTE.io/837.134.redo.html) || [ModelSEED](https://emmamglass.github.io/ReconstructorMEMOTE.io/837.83MS.html) || [CarveME](https://emmamglass.github.io/ReconstructorMEMOTE.io/837.83C.html)
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__*Bacillus amyloliquefaciens:*__ [Resonstructor](https://emmamglass.github.io/ReconstructorMEMOTE.io/1390.556.redo.html) || [ModelSEED](https://emmamglass.github.io/ReconstructorMEMOTE.io/1390.556MS.html) || [CarveME](https://emmamglass.github.io/ReconstructorMEMOTE.io/1390.556C.html)
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__*Citrobacter braakii:*__ [Resonstructor](https://emmamglass.github.io/ReconstructorMEMOTE.io/57706.84.redo.html) || [ModelSEED](https://emmamglass.github.io/ReconstructorMEMOTE.io/57706.84MS.html) || [CarveME](https://emmamglass.github.io/ReconstructorMEMOTE.io/57706.84C.html)
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__*Acinetobacter bereziniae:*__ [Resonstructor](https://emmamglass.github.io/ReconstructorMEMOTE.io/106648.24.redo.html) || [ModelSEED](https://emmamglass.github.io/ReconstructorMEMOTE.io/106648.24MS.html) || [CarveME](https://emmamglass.github.io/ReconstructorMEMOTE.io/106648.24C.html)
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__*Tropheryma whipplei:*__ [Resonstructor](https://emmamglass.github.io/ReconstructorMEMOTE.io/218496.4.redo.html) || [ModelSEED](https://emmamglass.github.io/ReconstructorMEMOTE.io/218496.4MS.html) || [CarveME](https://emmamglass.github.io/ReconstructorMEMOTE.io/218496.4C.html)
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__*Proteus mirabilis:*__ [Resonstructor](https://emmamglass.github.io/ReconstructorMEMOTE.io/529507.6.redo.html) || [ModelSEED](https://emmamglass.github.io/ReconstructorMEMOTE.io/529507.6MS.html) || [CarveME](https://emmamglass.github.io/ReconstructorMEMOTE.io/529507.6C.html)
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__*Clostridiodes difficile:*__ [Resonstructor](https://emmamglass.github.io/ReconstructorMEMOTE.io/699034.5.redo.html) || [ModelSEED](https://emmamglass.github.io/ReconstructorMEMOTE.io/699034.5MS.html) || [CarveME](https://emmamglass.github.io/ReconstructorMEMOTE.io/699034.5C.html)
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__*Campylobacter jejuni:*__ [Resonstructor](https://emmamglass.github.io/ReconstructorMEMOTE.io/1349827.3.redo.html) || [ModelSEED](https://emmamglass.github.io/ReconstructorMEMOTE.io/1349827.3MS.html) || [CarveME](https://emmamglass.github.io/ReconstructorMEMOTE.io/1349827.3C.html)
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__*Helicobacter pylori:*__ [Resonstructor](https://emmamglass.github.io/ReconstructorMEMOTE.io/1382925.3.redo.html) || [ModelSEED](https://emmamglass.github.io/ReconstructorMEMOTE.io/1382925.3MS.html) || [CarveME](https://emmamglass.github.io/ReconstructorMEMOTE.io/1382925.3C.html)
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__*Escherichia coli:*__ [Resonstructor](https://emmamglass.github.io/ReconstructorMEMOTE.io/2848143.3.redo.html) || [ModelSEED](https://emmamglass.github.io/ReconstructorMEMOTE.io/2848143.3MS.html) || [CarveME](https://emmamglass.github.io/ReconstructorMEMOTE.io/2848143.3C.html)
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See below in the __Supplementary Model Checks and Analyses__ at the bottom of the README for links to stable .html renderings of the MEMOTE scores and comparisons to other automatic model generation tools
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#### /reconstructor
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contains all package source code

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