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Commits on Dec 3, 2025

• Update config.yaml

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• Update vsearch_parsing.R

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• Update vsearch_parsing.R

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Commits on Nov 18, 2025

• Update README.md

  saharbagheri

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• Delete dada2_sbatch_apptainer.sh

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• making bulk path visible in the container

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Commits on Nov 15, 2025

• Update README.md

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Commits on Nov 14, 2025

• Update README.md

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• Update dada2_sbatch_apptainer.sh

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• Create dada2_sbatch_apptainer.sh

  saharbagheri

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• Updating apptainer usage README.md

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• Create Version_check_apptainer.sh

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Commits on Nov 13, 2025

• Update README.md

  saharbagheri

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• Finalizing adding apptainer sif images

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• Update README.md

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• Update README.md

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Commits on Jun 20, 2025

• Update plotQualityProfile.R

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Commits on Jun 5, 2025

• Update config.yaml

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Commits on May 26, 2025

• Update config.yaml

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Commits on May 22, 2025

• Update config.yaml

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Commits on May 14, 2025

• Update config.yaml

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Commits on Apr 28, 2025

• Update qc_report.Rmd

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• Update learnErrorRates.R

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• Sorting sample names

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Commits on Apr 13, 2025

• Update qc_report.Rmd

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Commits on Mar 3, 2025

• Update removeChimeras.R

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Commits on Mar 1, 2025

• Update prepare.py

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Commits on Feb 22, 2025

• Update prepare.py

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Commits on Feb 21, 2025

• Update config.yaml

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• Update README.md

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Commits on Feb 5, 2025

• Update qc_report.Rmd

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• Update qc_report.Rmd

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Commits on Feb 4, 2025

• Update README.md

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Commits on Jan 31, 2025

• Update qc_report.Rmd

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• Update qc_cutadapt.smk

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