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environment.yaml
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environment.yaml
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name: nisb
channels:
- conda-forge
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- bzip2=1.0.8
- ca-certificates=2024.8.30
- cython==3.0.11
- ld_impl_linux-64=2.43
- libexpat=2.6.3
- libffi=3.4.2
- libgcc=14.1.0
- libgcc-ng=14.1.0
- libgomp=14.1.0
- libnsl=2.0.1
- libsqlite=3.46.1
- libuuid=2.38.1
- libxcrypt=4.4.36
- libzlib=1.3.1
- ncurses=6.5
- numpy==2.0.2
- openssl=3.3.2
- pip=24.2
- python=3.11.10
- readline=8.2
- setuptools=75.1.0
- tk=8.6.13
- wheel=0.44.0
- xz=5.2.6
- pip:
- absl-py==2.1.0
- aiohappyeyeballs==2.4.3
- aiohttp==3.10.9
- aiosignal==1.3.1
- argparse==1.4.0
- asciitree==0.3.3
- attrs==24.2.0
- batchgenerators==0.25
- certifi==2024.8.30
- charset-normalizer==3.4.0
- connected-components-3d==3.19.0
- contourpy==1.3.0
- cycler==0.12.1
- dicom2nifti==2.5.0
- fasteners==0.19
- filelock==3.16.1
- fonttools==4.54.1
- frozenlist==1.4.1
- fsspec==2024.9.0
- future==1.0.0
- grpcio==1.66.2
- idna==3.10
- imageio==2.35.1
- importlib-resources==6.4.5
- jinja2==3.1.4
- joblib==1.4.2
- kiwisolver==1.4.7
- lazy-loader==0.4
- lightning-utilities==0.11.7
- linecache2==1.0.0
- llvmlite==0.43.0
- markdown==3.7
- markupsafe==3.0.1
- matplotlib==3.9.2
- medpy==0.5.2
- monai==1.3.2
- mpmath==1.3.0
- multidict==6.1.0
- networkx==3.3
- nibabel==5.3.0
- numba==0.60.0
- numcodecs==0.13.1
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==9.1.0.70
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.20.5
- nvidia-nvjitlink-cu12==12.6.77
- nvidia-nvtx-cu12==12.1.105
- packaging==24.1
- pandas==2.2.3
- pillow==10.4.0
- propcache==0.2.0
- protobuf==5.28.2
- pydicom==3.0.1
- pyparsing==3.1.4
- python-dateutil==2.9.0.post0
- python-gdcm==3.0.24.1
- pytorch-lightning==2.4.0
- pytz==2024.2
- pyyaml==6.0.2
- requests==2.32.3
- scikit-image==0.24.0
- scikit-learn==1.5.2
- scipy==1.14.1
- simpleitk==2.4.0
- six==1.16.0
- sympy==1.13.3
- tensorboard==2.18.0
- tensorboard-data-server==0.7.2
- threadpoolctl==3.5.0
- tifffile==2024.9.20
- torch==2.4.1
- torchaudio==2.4.1
- torchmetrics==1.4.3
- torchvision==0.19.1
- tqdm==4.66.5
- traceback2==1.4.0
- triton==3.0.0
- typing-extensions==4.12.2
- tzdata==2024.2
- unittest2==1.1.0
- urllib3==2.2.3
- werkzeug==3.0.4
- yarl==1.14.0
- zarr==2.18.3
- -e git+https://github.com/MIC-DKFZ/MedNeXt.git#egg=mednextv1
- git+https://github.com/funkelab/funlib.evaluate.git