Reproducibility of results/figures from omicverse paper. OmicVerse is the fundamental package for multi omics included bulk ,single cell and spatial RNA-seq analysis with Python. For more information, please read our paper: OmicVerse: A single pipeline for exploring the entire transcriptome universe
A collection of processed data discussed in this manuscript have been deposited on figshare (https://doi.org/10.6084/m9.figshare.23165636) and (https://doi.org/10.6084/m9.figshare.26023324).
A tutorial on the reproduction of the paper is available at https://Starlitnightly.github.io/omicverse-reproducibility/
- Figure_2,sfig2,sfig3,sfig4:
dg_ACGAN.ipynb,dg_CGAN.ipynb,dg_bulktrajblend.ipynb,dg_metric_bulktrajblend.ipynb,hpc_ACGAN.ipynb,hpc_CGAN.ipynb,hpc_bulktrajblend.ipynb,hpc_metric_bulktrajblend.ipynb,metric1.ipynbandmetric2.ipynb - Figure_3,sfig5,sfig6,:
ov_simulated_interruptions.ipynb - Figure_4:
ov_deg.ipynbandov_wgcna.ipynb - Figure_5,sfig7:
ov_scrna.ipynbandov_scrna-epi.ipynb - Figure_6,sfig8:
ov_glue_preprocessed.ipynbandov_mofa.ipynb
- Zehua Zeng (starlitnightly@163.com, or zehuazeng@xs.ustb.edu.cn)
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