An R package for CNV-based association studies.
CoNVaQ provides two models:
- A standard statistical association model using Fisher's exact test.
- A query-based model, finding CNV regions matching user-specified predicates.
CoNVaQ is also available as an online platform at https://convaq.compbio.sdu.dk.
You can install the latest version using devtools with:
devtools::install_github("SimonLarsen/convaq@*release")CoNVaQ is licensed under an MIT license. See the LICENSE file for details.
If you use CoNVaQ in your research, we kindly ask you to cite the following publication:
Simon Jonas Larsen, Luisa Matos do Canto, Silvia Regina Rogatto, Jan Baumbach (2018). CoNVaQ: a web tool for copy number variation-based association studies BMC Genomics, 19(1), 369. DOI: https://doi.org/10.1186/s12864-018-4732-8.