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Commits on Dec 29, 2022

• Merge pull request #2 from Sentieon/bam_pipelines

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• Add the Bam to VCF pipeline to the README

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Commits on Dec 20, 2022

• Add pipelines for BAM to VCF processing

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Commits on Dec 7, 2022

• Only run DNAModelApply with DNAscope

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• Reorganize tasks into separate files

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• Collect some common test functionality into functions

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Commits on Dec 6, 2022

• Update docker image

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Commits on Dec 5, 2022

• Update a link in the germline README

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• Add a germline fastq->VCF pipeline

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Commits on Dec 2, 2022

• Move the CCDG WDL to a pipelines directory

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Commits on Jun 19, 2019

• Add the reference genome for CRAM decoding

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Commits on Jan 23, 2019

• Fix check for the number of r1 reads equals r2 reads

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• Add samtools flagstat and metrics collection algos.

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Commits on Dec 4, 2018

• Add single-server CCDG fastq to VCF pipeline

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• Initial commit

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