CICD.yml

name: CI-CD

on:
  push:
  release:
  pull_request:

jobs:
  test:
    name: Py${{ matrix.PYTHON_VERSION }}
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}
    env:
      CI: 'true'
      OS: 'linux'
      PYTHON_VERSION: ${{ matrix.PYTHON_VERSION }}
      FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: "true"
      
    strategy:
      fail-fast: false 
      matrix:
        PYTHON_VERSION: ['3.9', '3.10', '3.11']
    steps:
      - name: Checkout Pull Requests
        uses: actions/checkout@v6

      - name: Install Environment Dependencies
        run: |
          sudo apt-get update --fix-missing
          sudo apt-get install -y libgit2-dev xvfb x11-utils libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xfixes0 xdotool

      - name: Setup miniconda
        uses: conda-incubator/setup-miniconda@v4
        with:
          miniconda-version: "latest" 
          python-version: ${{ matrix.PYTHON_VERSION }}
          channel-priority: false    # "strict"
          channels: "conda-forge"  
          mamba-version: "*"
          show-channel-urls: true 

      - name: Setup environment
        run: |
          mamba install spyder
          pip install -e .
          conda list

  generate_artifacts:
    needs: test
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}

    steps:
      - name: Checkout Pull Requests
        uses: actions/checkout@v6

      - name: Install Environment Dependencies
        shell: bash
        run: |
          sudo apt-get update --fix-missing

      - name: Setup miniconda
        uses: conda-incubator/setup-miniconda@v4
        with:
          miniconda-version: "latest" 
          python-version: 3.9
          channel-priority: false    # "strict"
          channels: "conda-forge"  
          mamba-version: "*"
          show-channel-urls: true 

      - name: Compute Version
        id: computed_version
        run: |
          if [[ ${{ github.event.release.tag_name != '' }} != false ]]
          then
            echo ::set-output name=VERSION::$(echo $GITHUB_REF | cut -d / -f 3)
          else
            echo ::set-output name=VERSION::$(echo "0.0.0")
          fi

      - name: Apply version
        run: |
          echo Version is ${{ steps.computed_version.outputs.VERSION }}
          cd scripts
          python package_tool.py --tag-version ${{ steps.computed_version.outputs.VERSION }}
          cd ..
          
      - name: Setup environment
        run: |
          pip install sphinx sphinx-rtd-theme myst-parser sphinx-markdown-tables
          pip install --upgrade myst-parser
          pip install PyQt5 qdarkstyle lxml qtawesome
          pip install check-manifest
          pip install twine
          pip install -e .

      - name: Run Manifest Check
        run: |
          echo 'Check manifest of Pylab-ML'
          check-manifest

      - name: Build Sphinx
        run: |
            sphinx-build -b html docs/source/ docs/build/html
            touch docs/build/html/.nojekyll

      - name: Fix output file permissions
        run: |
            sudo chown -R $USER:$USER docs

      - name: Upload docs to Github artifact
        uses: actions/upload-artifact@v7
        with:
          path: docs/build/html/
          name: docs-output

      - name: Deploy preview
        uses: rossjrw/pr-preview-action@v1
        with:
          source-dir: ./docs/build/html
 
      - uses: JamesIves/github-pages-deploy-action@v4
        with:
          folder: ./docs/build/html
          branch: gh-pages
          clean-exclude: pr-preview

      - name: Generate distribution sdist files
        run: |
          cd scripts
          python -m pip install build
          python package_tool.py
          cd ..

      - name: Check distribution files
        run: |
          twine check output/*

      - name: Upload Build Artifacts
        uses: actions/upload-artifact@v7
        with:
          name: output
          path: ./output

  publish:
    if: ${{ github.event.release.tag_name != '' }}
    needs: generate_artifacts
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}

    steps:
      - name: Install
        run: |
          python -m pip install twine

      - name: Get artifacts from build job
        uses: actions/download-artifact@v3
        with:
          name: output
          path: |
            output

      - name: Extend Release Assets
        uses: alexellis/upload-assets@0.3.0
        env:
          GITHUB_TOKEN: ${{ github.token }}
        with:
          asset_paths: '["output/*"]'

      - name: Upload to PyPi using twine
        run: |
          for i in `find output/ -type f`; do twine upload -u __token__ -p  ${{ secrets.PYPI_TOKEN }} $i; done