Fix CI by downgrading OS image (#1160)

- Downgrade from ubuntu-latest (recently updated from 22.04 to 24.04) back to ubuntu-22.04
- Explicitly add PyQT6-sip dependency to py-epidata, as versions after 13.8 require a newer python version (3.9)

Author: reneSchm

.github/workflows/epidata_main.yml

@@ -20,7 +20,7 @@ on:
 
 jobs:
   pre-commit:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
     - uses: actions/checkout@v4
     - uses: actions/setup-python@v5
@@ -29,7 +29,7 @@ jobs:
     - uses: pre-commit/action@v3.0.1
 
   build-py-epidata:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     container: quay.io/pypa/manylinux_2_28_x86_64
     steps:
       - uses: actions/checkout@v4
@@ -39,7 +39,7 @@ jobs:
 
   build-py-plot:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     container: quay.io/pypa/manylinux_2_28_x86_64
     steps:
       - uses: actions/checkout@v4
@@ -52,7 +52,7 @@ jobs:
     strategy:
       matrix: 
         version: ["3.8", "3.11"]
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-py
@@ -67,7 +67,7 @@ jobs:
     strategy:
       matrix: 
         version: ["3.8", "3.11"]
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-py
@@ -77,7 +77,7 @@ jobs:
           coverage: ON 
 
   merge-artifacts:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     strategy:
       matrix:
         packages: [epidata, plot]
@@ -91,7 +91,7 @@ jobs:
 
   test-pylint-epidata:
     needs: build-py-epidata
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-pylint
@@ -100,7 +100,7 @@ jobs:
 
   test-pylint-plot:
     needs: build-py-plot
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-pylint
@@ -109,7 +109,7 @@ jobs:
 
   download-data:
     needs: build-py-epidata
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     continue-on-error: true
     steps:
       - uses: actions/checkout@v4

.github/workflows/main.yml

@@ -19,7 +19,7 @@ on:
 
 jobs:
   pre-commit:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
@@ -36,7 +36,7 @@ jobs:
         version: ["latest", "min"]
         include:
           - version: "latest"
-            os: "ubuntu-latest"
+            os: "ubuntu-22.04"
           - version: "min"
             os: "ubuntu-20.04"
     runs-on: ${{ matrix.os }}
@@ -52,7 +52,7 @@ jobs:
 
   build-cpp-gcc-no-optional-deps:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/linux-build
@@ -64,7 +64,7 @@ jobs:
 
   build-cpp-gcc-openmp:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/linux-build
@@ -114,7 +114,7 @@ jobs:
         version: ["latest", "min"]
         include:
           - version: "latest"
-            os: "ubuntu-latest"
+            os: "ubuntu-22.04"
           - version: "min"
             os: "ubuntu-20.04"
     runs-on: ${{ matrix.os }}
@@ -127,7 +127,7 @@ jobs:
 
   merge-test-artifacts:
     needs: [test-cpp-gcc_clang, test-cpp-msvc, test-py-surrogatemodel]
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - name: merge-coverage-artifacts
         uses: actions/upload-artifact/merge@v4
@@ -153,7 +153,7 @@ jobs:
   test-cpp-gcc-no-optional-deps:
     if: github.event.pull_request.draft == false
     needs: build-cpp-gcc-no-optional-deps
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/linux-test
@@ -164,7 +164,7 @@ jobs:
   test-cpp-gcc-openmp:
     if: github.event.pull_request.draft == false
     needs: build-cpp-gcc-openmp
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     timeout-minutes: 30
     env:
       OMP_NUM_THREADS: 4
@@ -216,7 +216,7 @@ jobs:
         version: ["latest", "min"]
         include:
           - version: "latest"
-            os: "ubuntu-latest"
+            os: "ubuntu-22.04"
           - version: "min"
             os: "ubuntu-20.04"
     runs-on: ${{ matrix.os }}
@@ -247,7 +247,7 @@ jobs:
 
   build-py-generation:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     container: quay.io/pypa/manylinux_2_28_x86_64
     steps:
       - uses: actions/checkout@v4
@@ -257,7 +257,7 @@ jobs:
 
   build-py-simulation:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     container: quay.io/pypa/manylinux_2_28_x86_64
     steps:
       - uses: actions/checkout@v4
@@ -267,7 +267,7 @@ jobs:
 
   build-py-surrogatemodel:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     container: quay.io/pypa/manylinux_2_28_x86_64
     steps:
       - uses: actions/checkout@v4
@@ -281,7 +281,7 @@ jobs:
       matrix: 
         version: ["3.8", "3.11"]
     needs: build-py-generation
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-py
@@ -294,7 +294,7 @@ jobs:
     strategy:
       matrix: 
         version: ["3.8", "3.11"]
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-py
@@ -307,7 +307,7 @@ jobs:
     strategy:
       matrix: 
         version: ["3.8", "3.11"]
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-py
@@ -318,15 +318,15 @@ jobs:
 
   test-docs:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-docs
 
   codecov:
     if: github.event.pull_request.draft == false
     needs: merge-test-artifacts
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - name: Install dependencies
@@ -354,7 +354,7 @@ jobs:
     permissions:
       contents: write
     needs: [test-docs, merge-test-artifacts]
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v4
       - name: Install dependencies

pycode/memilio-epidata/setup.py

@@ -91,6 +91,8 @@ def run(self):
         'pyxlsb',
         'wget',
         'twill==3.1',
+        # set PyQt6-sip version as the one pulled by PyQt6 in Epidata-CI (using manylinux_2_28_x86_64) req. python 3.9
+        'PyQt6-sip<13.9',
         'PyQt6',
         'python-calamine',
         pymagic