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Rob Campbell edited this page Jul 25, 2017
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BakingTray is a ScanImage wrapper that performs serial section 2-photon tomography (STP) within MATLAB.
See Starting for the first time.
Contributions are welcome. Please read the developer notes and code organizatiob pages.
Installation: Getting Started
Hardware requirements
Setting up: Overview
Verifying hardware operation
Starting BakingTray
Setting up ScanImage
Settings Files
Achieving high stitching accuracy
Installation: Calibration
Basic calibrating procedures
Calibrating the stages
Fine-tuning positioning accuracy
Further User Instructions
FAQ
Problems & Solutions