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Issues list

Modify a set of genes for a set of cells from real scRNA-seq data to create a synthetic dataset
#68 opened Dec 6, 2024 by siyao-liu updated Dec 7, 2024
3
Error in simulating scRNAseq dataset using all genes
#69 opened Dec 6, 2024 by siyao-liu updated Dec 7, 2024
1
Copula fit takes longer time
#65 opened Nov 4, 2024 by Lahiru-lsb updated Nov 27, 2024
16
Starting values for fit_marginal?
#67 opened Nov 25, 2024 by limfuxing updated Nov 27, 2024
1
New Count Generation running for too long
#66 opened Nov 6, 2024 by rashikajakhmola updated Nov 14, 2024
2
Simulating both spatial and condition effect
#63 opened Oct 15, 2024 by AlanTeoYueYang updated Oct 20, 2024
1
Error in UseMethod("family"): no applicable method for 'family' applied to an object of class "NULL"
#64 opened Oct 19, 2024 by MohammadIzadi updated Oct 20, 2024
1
scDesign3's installation errors
#62 opened Oct 6, 2024 by zhou-1314 updated Oct 6, 2024
2
the results of fit_marginal are all null
#61 opened Sep 27, 2024 by Santanevrgivup updated Oct 1, 2024
6
Questions of gaussian family
#56 opened Aug 3, 2024 by TBW108 updated Sep 25, 2024
5
Copula fit not reproducible when using pbmcmapply option bug Something isn't working help wanted Extra attention is needed
#57 opened Sep 13, 2024 by chrisycd updated Sep 25, 2024
Simulate spatial dataset with several batches
#59 opened Sep 17, 2024 by VivLon updated Sep 24, 2024
3
Long runtime for simulating spatial data
#22 opened Dec 12, 2023 by yollct updated Sep 12, 2024
14
Generate new data given labels
#53 opened Jul 24, 2024 by fbao-fudan updated Aug 2, 2024
13
BiocParallel error in Simulate spot-resolution spatial data for cell-type deconvolution
#30 opened Feb 22, 2024 by RadishTheVeggie updated Mar 2, 2024
1
mc.cores > 1 not supported on windows good first issue Good for newcomers
#29 opened Feb 12, 2024 by lucas02061 updated Feb 12, 2024
2
Can we use total gene single cell data to generate the simulated spatial data
#24 opened Jan 11, 2024 by xiangpin updated Jan 11, 2024
1
A question about simulating multi-omic data from single-omic data
#23 opened Jan 2, 2024 by HelloWorldLTY updated Jan 2, 2024
2
Question on setting batch effect strength
#17 opened Aug 18, 2023 by XiaPoppy updated Aug 18, 2023
1
Simulate batch effect and condition effect simutaneously.
#8 opened May 17, 2023 by yujias424 updated May 18, 2023
3
Copula model underfitting
#6 opened Mar 24, 2023 by RoseYuan updated Mar 24, 2023
1
camelCase Bioconductor Convention is Not Used
#4 opened Jan 22, 2023 by DarioS updated Jan 23, 2023
2
simulating a 2000cell*150000peak scATAC
#3 opened Nov 23, 2022 by Chen-Li-17 updated Nov 25, 2022
2
ProTip! no:milestone will show everything without a milestone.