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@SMD-Bioinformatics-Lund

SMD Bioinformatics Lund

Bioinformatic team at Section for Molecular Diagnostics, Laboratory Services, Region Skåne, Lund

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  1. gens gens Public

    TypeScript 14 5

  2. nextflow_wgs nextflow_wgs Public

    Perl 6 5

  3. nextflow_microwgs nextflow_microwgs Public

    Perl 2 1

  4. nextflow_tumwgs nextflow_tumwgs Public

    Perl 2 2

  5. SomaticPanelPipeline SomaticPanelPipeline Public

    Nextflow 2

Repositories

Showing 10 of 58 repositories
  • gens Public
    SMD-Bioinformatics-Lund/gens’s past year of commit activity
    TypeScript 14 MPL-2.0 5 57 0 Updated Apr 8, 2025
  • SomaticPanelPipeline Public
    SMD-Bioinformatics-Lund/SomaticPanelPipeline’s past year of commit activity
    Nextflow 0 2 17 (1 issue needs help) 1 Updated Apr 8, 2025
  • bonsai-prp Public

    Pipeline output Processing Program for Bonsai

    SMD-Bioinformatics-Lund/bonsai-prp’s past year of commit activity
    Python 0 GPL-3.0 0 6 0 Updated Apr 8, 2025
  • coyote_blueprinted Public
    SMD-Bioinformatics-Lund/coyote_blueprinted’s past year of commit activity
    Python 0 0 16 (1 issue needs help) 0 Updated Apr 4, 2025
  • nextflow_ST_rnaseqfus Public

    A rnaseq fussion detection assay at CMD

    SMD-Bioinformatics-Lund/nextflow_ST_rnaseqfus’s past year of commit activity
    Perl 0 0 1 0 Updated Apr 2, 2025
  • bonsai Public

    Visualize and analyze resistance and outbreak of bacterial pathogen

    SMD-Bioinformatics-Lund/bonsai’s past year of commit activity
    Standard ML 4 GPL-3.0 1 26 1 Updated Apr 1, 2025
  • coyote_cli Public

    command line interface for coyote

    SMD-Bioinformatics-Lund/coyote_cli’s past year of commit activity
    Python 0 1 3 0 Updated Apr 1, 2025
  • PGxModule Public

    PGxModule is an advanced Nextflow DSL2 workflow, designed to seamlessly integrate into your genomics pipeline. It empowers you to generate sample-specific reports with clinical guidelines, leveraging state-of-the-art variant detection in Genomic Medicine Sweden sequencing panels.

    SMD-Bioinformatics-Lund/PGxModule’s past year of commit activity
    Nextflow 1 GPL-3.0 0 6 (1 issue needs help) 0 Updated Mar 31, 2025
  • nextflow_wgs Public
    SMD-Bioinformatics-Lund/nextflow_wgs’s past year of commit activity
    Perl 6 5 92 (3 issues need help) 3 Updated Mar 28, 2025
  • Nisse Public

    Post-processing pipeline for Tomte

    SMD-Bioinformatics-Lund/Nisse’s past year of commit activity
    Nextflow 0 0 4 0 Updated Mar 27, 2025
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