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Commits on Jan 9, 2025

• Merge pull request #18 from Russel88/dev

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• v.1.0.1 - Addition of relative abundance file and changes to README

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Commits on Sep 4, 2024

• Merge pull request #17 from Russel88/trinezac-patch-1

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• Updated version to 1.0.0

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• Merge pull request #14 from pabloati/main

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Commits on Aug 1, 2024

• Update README.md

  pabloati

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Commits on Jul 7, 2024

• Update README.md

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• Update README.md

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• Merge branch 'msamtools' into main

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• Final version of msamtools branch

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Commits on May 27, 2024

• Added extra memory to gtdbtk

  pabloati

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Commits on May 24, 2024

• Update to GTDB-tk 2.4.0

  pabloati

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Commits on May 13, 2024

• Fixed bug in the gene_cluster2tax.py

  pabloati

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Commits on Apr 30, 2024

• Set 10% truncation as default

  pabloati

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Commits on Apr 22, 2024

• Merge pull request #3 from Russel88/main

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Commits on Apr 18, 2024

• Fixed bug related with Unclassified Archaea

  pabloati

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Commits on Apr 17, 2024

• Final updates

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Commits on Apr 12, 2024

• Merge pull request #12 from Russel88/dev

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• v.0.1.20 added feature for detecting strain-mixtures using allele frequencies

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Commits on Mar 19, 2024

• Added option to profile only the uniquely mapping reads

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  committed
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Commits on Mar 18, 2024

• Read profiling with redistribution included as option

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Commits on Mar 15, 2024

• Signature reads profiling added

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Commits on Mar 14, 2024

• Revert "Eliminated extra enviroment files"

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Commits on Feb 26, 2024

• Eliminated extra enviroment files

  pabloati

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• Final fixes to the pipeline

  pabloati

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Commits on Feb 19, 2024

• Update main.py

  pabloati

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• Merge remote-tracking branch 'origin/final_modifications'

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• Merge remote-tracking branch 'upstream/main'

  pabloati

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• Final modifications to the pipeline, adding a benchmarking option

  pabloati

  committed
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• fixed profile calculation

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Commits on Feb 5, 2024

• benchmarking final modifications

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Commits on Jan 26, 2024

• Fixed issues with the file location

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• Added the benchmarking option for both mapping and coverage filter

  pabloati

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  2a00b55

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• Initial changes to the benchmark process

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• Added the one tailed truncated mean to abundances calculations, as well as a selector for the truncated percentage of the distribution

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