From d394d8284d456ee96fccd62c931f177a19bea94d Mon Sep 17 00:00:00 2001 From: Rohit Satyam Date: Sat, 12 Oct 2024 17:56:35 +0300 Subject: [PATCH] Update exclude.txt Following outlier format reported in [issue 83](https://github.com/nextstrain/dengue/issues/83#issuecomment-2405537358) --- phylogenetic/config/exclude.txt | 81 ++++++++++++++++----------------- 1 file changed, 40 insertions(+), 41 deletions(-) diff --git a/phylogenetic/config/exclude.txt b/phylogenetic/config/exclude.txt index b19756b..ad4b0d1 100644 --- a/phylogenetic/config/exclude.txt +++ b/phylogenetic/config/exclude.txt @@ -897,44 +897,43 @@ OR389026 # denv2 many Ns OR389325 # denv2 many Ns OR389023 # denv2 many Ns OR389307 # denv2 many Ns -MK506262 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KU094071 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KM204119 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -EU848545 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MF576311 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MW945433 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MT076937 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MH613984 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MH613985 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MH613986 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MK506264 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MK506263 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KU094070 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KM204118 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KF704358 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KF704357 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KF704354 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KF704355 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KJ918750 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KF704356 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -HQ891023 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -HQ891024 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -GQ398268 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -FJ906959 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -FJ390389 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -EU854293 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KY586699 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -OP809583 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MT076948 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MK506265 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -JN697379 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KM190936 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MW793460 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MT076955 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KY586824 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KY586825 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MW793459 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KY586823 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -KY586826 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks -MK506266 # Detected outlier by Hill et. al. 2024 due to resequencing of commonly used virus stocks - +MK506262 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KU094071 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KM204119 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +EU848545 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MF576311 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MW945433 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MT076937 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MH613984 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MH613985 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MH613986 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MK506264 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MK506263 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KU094070 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KM204118 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KF704358 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KF704357 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KF704354 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KF704355 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KJ918750 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KF704356 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +HQ891023 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +HQ891024 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +GQ398268 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +FJ906959 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +FJ390389 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +EU854293 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KY586699 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +OP809583 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MT076948 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MK506265 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +JN697379 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KM190936 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MW793460 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MT076955 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KY586824 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KY586825 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MW793459 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KY586823 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +KY586826 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/) +MK506266 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)