@@ -188,17 +188,22 @@ <h2 class="anchored" data-anchor-id="setup">Setup</h2>
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</ div >
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< p > Load the renv with this (also in .Rprofile):</ p >
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< div class ="cell ">
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- < div class ="sourceCode cell-code " id ="cb4 "> < pre class ="sourceCode r code-with-copy "> < code class ="sourceCode r "> < span id ="cb4-1 "> < a href ="#cb4-1 " aria-hidden ="true " tabindex ="-1 "> </ a > < span class ="fu " > source</ span > ( < span class =" st " > " renv/activate.R"</ span > ) </ span > </ code > < button title ="Copy to Clipboard " class ="code-copy-button "> < i class ="bi "> </ i > </ button > </ pre > </ div >
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+ < div class ="sourceCode cell-code " id ="cb4 "> < pre class ="sourceCode r code-with-copy "> < code class ="sourceCode r "> < span id ="cb4-1 "> < a href ="#cb4-1 " aria-hidden ="true " tabindex ="-1 "> </ a > < span class ="co " > # source(" renv/activate.R") </ span > </ span > </ code > < button title ="Copy to Clipboard " class ="code-copy-button "> < i class ="bi "> </ i > </ button > </ pre > </ div >
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</ div >
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< div class ="cell ">
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< div class ="sourceCode cell-code " id ="cb5 "> < pre class ="sourceCode r code-with-copy "> < code class ="sourceCode r "> < span id ="cb5-1 "> < a href ="#cb5-1 " aria-hidden ="true " tabindex ="-1 "> </ a > < span class ="co "> # make renv pick-up rmarkdown dep:</ span > </ span >
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- < span id ="cb5-2 "> < a href ="#cb5-2 " aria-hidden ="true " tabindex ="-1 "> </ a > < span class ="fu "> library</ span > (rmarkdown)</ span >
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- < span id ="cb5-3 "> < a href ="#cb5-3 " aria-hidden ="true " tabindex ="-1 "> </ a > < span class ="fu "> library</ span > (knitr)</ span > </ code > < button title ="Copy to Clipboard " class ="code-copy-button "> < i class ="bi "> </ i > </ button > </ pre > </ div >
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+ < span id ="cb5-2 "> < a href ="#cb5-2 " aria-hidden ="true " tabindex ="-1 "> </ a > < span class ="fu "> install.packages</ span > (< span class ="st "> "rmarkdown"</ span > )</ span > </ code > < button title ="Copy to Clipboard " class ="code-copy-button "> < i class ="bi "> </ i > </ button > </ pre > </ div >
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+ < div class ="cell-output cell-output-stderr ">
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+ < pre > < code > Installing package into '/home/runner/work/_temp/Library'
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+ (as 'lib' is unspecified)</ code > </ pre >
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+ </ div >
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+ < div class ="sourceCode cell-code " id ="cb7 "> < pre class ="sourceCode r code-with-copy "> < code class ="sourceCode r "> < span id ="cb7-1 "> < a href ="#cb7-1 " aria-hidden ="true " tabindex ="-1 "> </ a > < span class ="fu "> library</ span > (rmarkdown)</ span >
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+ < span id ="cb7-2 "> < a href ="#cb7-2 " aria-hidden ="true " tabindex ="-1 "> </ a > < span class ="fu "> library</ span > (knitr)</ span > </ code > < button title ="Copy to Clipboard " class ="code-copy-button "> < i class ="bi "> </ i > </ button > </ pre > </ div >
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</ div >
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< p > Install Python packages with:</ p >
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< div class ="cell ">
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- < div class ="sourceCode cell-code " id ="cb6 "> < pre class ="sourceCode r code-with-copy "> < code class ="sourceCode r "> < span id ="cb6 -1 "> < a href ="#cb6 -1 " aria-hidden ="true " tabindex ="-1 "> </ a > < span class ="co "> # reticulate::install_python()</ span > </ span >
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- < span id ="cb6 -2 "> < a href ="#cb6 -2 " aria-hidden ="true " tabindex ="-1 "> </ a > reticulate< span class ="sc "> ::</ span > < span class ="fu "> py_install</ span > (< span class ="st "> "geopandas"</ span > )</ span > </ code > < button title ="Copy to Clipboard " class ="code-copy-button "> < i class ="bi "> </ i > </ button > </ pre > </ div >
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+ < div class ="sourceCode cell-code " id ="cb8 "> < pre class ="sourceCode r code-with-copy "> < code class ="sourceCode r "> < span id ="cb8 -1 "> < a href ="#cb8 -1 " aria-hidden ="true " tabindex ="-1 "> </ a > < span class ="co "> # reticulate::install_python()</ span > </ span >
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+ < span id ="cb8 -2 "> < a href ="#cb8 -2 " aria-hidden ="true " tabindex ="-1 "> </ a > reticulate< span class ="sc "> ::</ span > < span class ="fu "> py_install</ span > (< span class ="st "> "geopandas"</ span > )</ span > </ code > < button title ="Copy to Clipboard " class ="code-copy-button "> < i class ="bi "> </ i > </ button > </ pre > </ div >
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< div class ="cell-output cell-output-stdout ">
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< pre > < code > Using Python: /usr/bin/python3.12
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Creating virtual environment '~/.virtualenvs/r-reticulate' ... </ code > </ pre >
@@ -220,7 +225,7 @@ <h2 class="anchored" data-anchor-id="setup">Setup</h2>
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< div class ="cell-output cell-output-stderr ">
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< pre > < code > + /home/runner/.virtualenvs/r-reticulate/bin/python -m pip install --upgrade --no-user geopandas</ code > </ pre >
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</ div >
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- < div class ="sourceCode cell-code " id ="cb13 "> < pre class ="sourceCode r code-with-copy "> < code class ="sourceCode r "> < span id ="cb13 -1 "> < a href ="#cb13 -1 " aria-hidden ="true " tabindex ="-1 "> </ a > reticulate< span class ="sc "> ::</ span > < span class ="fu "> py_install</ span > (< span class ="st "> "matplotlib"</ span > )</ span > </ code > < button title ="Copy to Clipboard " class ="code-copy-button "> < i class ="bi "> </ i > </ button > </ pre > </ div >
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+ < div class ="sourceCode cell-code " id ="cb15 "> < pre class ="sourceCode r code-with-copy "> < code class ="sourceCode r "> < span id ="cb15 -1 "> < a href ="#cb15 -1 " aria-hidden ="true " tabindex ="-1 "> </ a > reticulate< span class ="sc "> ::</ span > < span class ="fu "> py_install</ span > (< span class ="st "> "matplotlib"</ span > )</ span > </ code > < button title ="Copy to Clipboard " class ="code-copy-button "> < i class ="bi "> </ i > </ button > </ pre > </ div >
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< div class ="cell-output cell-output-stdout ">
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< pre > < code > Using virtual environment '/home/runner/.virtualenvs/r-reticulate' ...</ code > </ pre >
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</ div >
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