This season we will be covering papers from outside the group (~8), sfotware from the group (1-2) and eventually discussion of grant proposals.
Papers: chose one paper from the list below or propose one. Papers should: (a) introduce novel metholdology that is relevant to the topics of research of interest of the group, or (b) be relevant to the particular applications you are working on.
Software: we will organize 1-2 sections to share software being developed by the group.
Grant proposals: if time permit we will include on section on grant writing (format to be determined).
- Date: Wednesday, January 20, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): NA
- Topic(s): Organizational meeting
- Materials: NA
- Date: Wednesday, January 27, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): Agustin
- Topic(s): DNA Methylation
- Materials:
- Date: Wednesday, February 3, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): Hank
- Topic(s): Identify Cis-eQTL Target Gene associated with GBM
- Materials:
- Date: Wednesday, February 10, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): Yeni
- Topic(s): The Nature of genetic Variation for Complex Traits
- Materials:
- Date: Wednesday, February 17, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): Prof. Jiayu Zhou
- Topic(s): Multi-task Learning and its Applications
- Materials:
- Date: Thursday, February 25, 2016.
- Time: 1:30-3:00pm
- Room: East Conference Room
- Presenter(s): Dr. Hsu & Dr. Ho
- Topic(s): Genetic architecture and predictive modeling of quantitative traits
- Materials:
- Date: Wednesday, March 2, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s):
- Topic(s):
- Materials:
- Wednesday, March 9, 2016. (No Lab Meeting, Spring Break)
- Date: Wednesday, March 16, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): TBD
- Topic(s):
- Materials:
- Date: Wednesday, March 23, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): Felix
- Topic(s): Modification of the Coiled-Coil domain from the RB gene in transgenic potato using the CRISPR/Cas9 system
- Materials:
- Date: Wednesday, March 30, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): Fernando
- Topic(s): Use of high-resolution image data for prediction of maize yield
- Materials:
- Date: Wednesday, April 6, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): NA
- Topic(s): NA
- Materials: NA
- Date: Wednesday, April 13, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): Sudha
- Topic(s): Modeling genetic heterogeneity and sex differences using random effect interactions
- Materials:
- Date: Wednesday, April 20, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): Mengying
- Topic(s): Significancy vs prediction power, partition retention method
- Materials:
- Date: Wednesday, April 27, 2016.
- Time: 1:45-2:45pm
- Room: Central Conference Room
- Presenter(s): Scott
- Topic(s): RNA editing: new sources of genomic variation, software and application
- Materials:
- [ Lo et al., Why significant variables aren’t automatically good predictors (PNAS, 2015) ] (http://www.pnas.org/content/112/45/13892.abstract)
- Canela-Xandri et al., Accurate genetic profiling of anthropometric traits using a big data approach.
- Kumar et al., Limitations of GCTA as a solution to the missing heritability problem (PNAS, 2015)
- Mancuso et al. The contribution of rare variation to prostate cancer heritability (NG, 2015)
- Loh et al. "Bolt-REML" (NG, 2015)
- Volfovsky et al., Testing for Nodal Dependence in Relational Data Matrices (JASA, 2015)
- Jiang et al., The E-MS Algorithm: Model Selection With Incomplete Data (JASA, 2015)
- Efron, Estimation and Accuracy after Model Selection (JASA, 2014)
- Li et al. A Gene Regulatory Program in Human Breast Cancer (Genetics, 2015)
- Bourke et al. The Double-Reduction Landscape in Tetraploid Potato as Revealed by a High-Density Linkage Map (Genetics, 2015)
- Deans & Maggert, What do you mean "Epigenetic"? (Genetics, 2015)
- Renhua Li,A Gene Regulatory Program in Human Breast Cancer
- Armando Caballero, The Nature of Genetic Variation for Complex Traits Revealed by GWAS and Regional Heritability Mapping Analyses
- Nicholas A. Furlotte, Efficient Multiple-Trait Association and Estimation of Genetic Correlation Using the Matrix-Variate Linear Mixed Model
- Deniz Akdemir, Locally Epistatic Genomic Relationship Matrices for Genomic Association and Prediction
- Paul Brennan,Genomics of Cancer and a New Era for Cancer Prevention
- Roderick C. Slieker, DNA Methylation Landscapes of Human Fetal Development
- Qiong Lin, Epigenetic Aging Signatures Are Coherently Modified in Cancer
- Tian Yuan, An Integrative Multi-scale Analysis of the Dynamic DNA Methylation Landscape in Aging
- Xu Chen, Dominant Genetic Variation and Missing Heritability for Human Complex Traits: Insights from Twin versus Genome-wide Common SNP Models
- Bjarni J. Vilhjálmsson, Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores
- Big data mining yields novel insights on cancer
- Factors underlying variable DNA methylation in a human community cohort
- Integration Analysis of Three Omics Data Using Penalized Regression Methods: An Application to Bladder Cancer Contrasting genetic architectures of schizophrenia and other complex diseases using fast variance-components analysis Efficient Multiple-Trait Association and Estimation of Genetic Correlation Using the Matrix-Variate Linear Mixed Model