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‎mh_utils/worklist_parser/columns.py

Lines changed: 28 additions & 57 deletions
Original file line numberDiff line numberDiff line change
@@ -174,213 +174,184 @@ def from_attribute(cls, attribute: "Attribute") -> "Column":
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attribute_id=0,
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attribute_type=AttributeType.SystemDefined,
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dtype=str,
177-
default_value='',
178-
),
177+
default_value='', ),
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Column(
180179
name="Sample Name",
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attribute_id=1,
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attribute_type=AttributeType.SystemDefined,
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dtype=str,
184-
default_value='',
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),
183+
default_value='', ),
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Column(
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name="Rack Code",
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attribute_id=2,
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attribute_type=AttributeType.SystemDefined,
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dtype=str,
191-
default_value='',
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),
189+
default_value='', ),
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Column(
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name="Rack Position",
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attribute_id=3,
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attribute_type=AttributeType.SystemDefined,
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dtype=str,
198-
default_value='',
199-
),
195+
default_value='', ),
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Column(
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name="Plate Code",
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attribute_id=4,
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attribute_type=AttributeType.SystemDefined,
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dtype=str,
205-
default_value='',
206-
),
201+
default_value='', ),
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Column(
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name="Plate Position",
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attribute_id=5,
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attribute_type=AttributeType.SystemDefined,
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dtype=str,
212-
default_value='',
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),
207+
default_value='', ),
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Column(
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name="Sample Position",
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attribute_id=6,
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attribute_type=AttributeType.SystemDefined,
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dtype=str,
219-
default_value='',
220-
),
213+
default_value='', ),
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Column(
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name="Method",
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attribute_id=7,
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attribute_type=AttributeType.SystemDefined,
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dtype=as_path,
226-
default_value=None,
227-
),
219+
default_value=None, ),
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Column(
229221
name="Override DA Method",
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attribute_id=8,
231223
attribute_type=AttributeType.SystemDefined,
232224
dtype=as_path,
233-
default_value=None,
234-
),
225+
default_value=None, ),
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Column(
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name="Data File",
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attribute_id=9,
238229
attribute_type=AttributeType.SystemDefined,
239230
dtype=as_path,
240-
default_value=None,
241-
),
231+
default_value=None, ),
242232
Column(
243233
name="Sample Type",
244234
attribute_id=10,
245235
attribute_type=AttributeType.SystemDefined,
246236
dtype=str,
247-
default_value="Unknown",
248-
),
237+
default_value="Unknown", ),
249238
Column(
250239
name="Method Type",
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attribute_id=11,
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attribute_type=AttributeType.SystemDefined,
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dtype=str,
254243
default_value="Method No Override",
255-
reorder_id=12,
256-
),
244+
reorder_id=12, ),
257245
Column(
258246
name="Balance Override",
259247
attribute_id=12,
260248
attribute_type=AttributeType.SystemDefined,
261249
dtype=str,
262250
default_value="No Override",
263-
reorder_id=13,
264-
),
251+
reorder_id=13, ),
265252
Column(
266253
name="Inj Vol (µl)",
267254
attribute_id=13,
268255
attribute_type=AttributeType.SystemDefined,
269256
dtype=injection_volume,
270257
default_value=5,
271-
reorder_id=14,
272-
),
258+
reorder_id=14, ),
273259
Column(
274260
name="Equilib Time (min)",
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attribute_id=14,
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attribute_type=AttributeType.SystemDefined,
277263
dtype=int,
278264
default_value=0,
279-
reorder_id=15,
280-
),
265+
reorder_id=15, ),
281266
Column(
282267
name="Dilution",
283268
attribute_id=15,
284269
attribute_type=AttributeType.SystemDefined,
285270
dtype=int,
286271
default_value=1,
287-
reorder_id=16,
288-
),
272+
reorder_id=16, ),
289273
Column(
290274
name="Wt/Vol",
291275
attribute_id=16,
292276
attribute_type=AttributeType.SystemDefined,
293277
dtype=float,
294278
default_value=0,
295-
reorder_id=17,
296-
),
279+
reorder_id=17, ),
297280
Column(
298281
name="Comment",
299282
attribute_id=17,
300283
attribute_type=AttributeType.SystemDefined,
301284
dtype=str,
302285
default_value='',
303-
reorder_id=18,
304-
),
286+
reorder_id=18, ),
305287
Column(
306288
name="Barcode",
307289
attribute_id=18,
308290
attribute_type=AttributeType.SystemDefined,
309291
dtype=str,
310292
default_value='',
311-
reorder_id=19,
312-
),
293+
reorder_id=19, ),
313294
Column(
314295
name="Reserved1",
315296
attribute_id=19,
316297
attribute_type=AttributeType.SystemDefined,
317298
dtype=str,
318299
default_value='',
319-
reorder_id=-1,
320-
),
300+
reorder_id=-1, ),
321301
Column(
322302
name="Reserved2",
323303
attribute_id=20,
324304
attribute_type=AttributeType.SystemDefined,
325305
dtype=str,
326306
default_value='',
327-
reorder_id=-1,
328-
),
307+
reorder_id=-1, ),
329308
Column(
330309
name="Reserved3",
331310
attribute_id=21,
332311
attribute_type=AttributeType.SystemDefined,
333312
dtype=str,
334313
default_value='',
335-
reorder_id=-1,
336-
),
314+
reorder_id=-1, ),
337315
Column(
338316
name="Reserved4",
339317
attribute_id=22,
340318
attribute_type=AttributeType.SystemDefined,
341319
dtype=float,
342320
default_value=0,
343-
reorder_id=-1,
344-
),
321+
reorder_id=-1, ),
345322
Column(
346323
name="Reserved5",
347324
attribute_id=23,
348325
attribute_type=AttributeType.SystemDefined,
349326
dtype=float,
350327
default_value=0,
351-
reorder_id=-1,
352-
),
328+
reorder_id=-1, ),
353329
Column(
354330
name="Reserved6",
355331
attribute_id=24,
356332
attribute_type=AttributeType.SystemDefined,
357333
dtype=float,
358334
default_value=0,
359-
reorder_id=-1,
360-
),
335+
reorder_id=-1, ),
361336
Column(
362337
name="Level Name",
363338
attribute_id=25,
364339
attribute_type=AttributeType.SystemDefined,
365340
dtype=str,
366341
default_value='',
367-
reorder_id=11,
368-
),
342+
reorder_id=11, ),
369343
Column(
370344
name="Sample Group",
371345
attribute_id=26,
372346
attribute_type=AttributeType.SystemDefined,
373347
dtype=str,
374348
default_value='',
375-
reorder_id=20,
376-
),
349+
reorder_id=20, ),
377350
Column(
378351
name="Info.",
379352
attribute_id=27,
380353
attribute_type=AttributeType.SystemDefined,
381354
dtype=str,
382355
default_value='',
383-
reorder_id=21,
384-
),
385-
]
356+
reorder_id=21, ), ]
386357
}

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