Routine updates.

Author: ATATC

README.md

@@ -1,49 +1 @@
-# ProjectNeura: SegSTRONG-C
-
-## Usage
-
-### Build Docker Image
-
-```shell
-docker build --no-cache ./ -t segstrongc:projnura
-```
-
-### Create Docker Container
-
-```shell
-docker run --ipc=host --rm -v "C:/SharedDatasets/SegSTRONGC_release/SegSTRONGC_nnunet:/workspace/data" --gpus="device=0" -it segstrongc:projnura
-```
-
-### Transfer Data
-
-```shell
-python data_transfer.py
-```
-
-### Set Environment Variables
-
-```shell
-export nnUNet_raw=/workspace/data/nnUNet_raw
-export nnUNet_preprocessed=/workspace/data/nnUNet_preprocessed
-export nnUNet_results=/workspace/data/nnUNet_weights
-```
-
-### Preprocess
-
-```shell
-nnUNetv2_plan_and_preprocess -d 1 --verify_dataset_integrity -pl nnUNetPlannerResEncM
-```
-
-### Train
-
-```shell
-nnUNetv2_train 1 2d all -p nnUNetResEncUNetMPlans -device cuda
-```
-
-### Predict
-
-```shell
-nnUNetv2_predict -i /workspace/val/smoke_nnunet -o /workspace/val/smoke_predicted -d 1 -c 2d -p nnUNetResEncUNetMPlans -f all --save_probabilities
-nnUNetv2_predict -i /workspace/val/lb_nnunet -o /workspace/val/lb_predicted -d 1 -c 2d -p nnUNetResEncUNetMPlans -f all --save_probabilities
-nnUNetv2_predict -i /workspace/val/blood_nnunet -o /workspace/val/blood_predicted -d 1 -c 2d -p nnUNetResEncUNetMPlans -f all --save_probabilities
-```
+# SegSTRONG-C