tag:github.com,2008:https://github.com/Project-MONAI/MONAILabel/releases 2024-11-23T02:48:39Z tag:github.com,2008:Repository/351826770/0.8.5 2024-11-25T23:18:07Z <h4>Added</h4> <ul> <li> <p><a href="https://github.com/Project-MONAI/MONAILabel?tab=readme-ov-file#sam-2">SAM2</a> as base model (Inference only) for all Radiology/Pathology/Endoscopy usecases.</p> <ul> <li>Updated 3D Slicer plugin to support ROI prompts for SAM2<br> <a target="_blank" rel="noopener noreferrer" href="https://private-user-images.githubusercontent.com/7339051/389728692-dc3d1651-1ad0-45d0-a407-49c4b7a41b85.gif?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.F0KvoYg27icwFV-OQ_Rk5_NQUq-TlYzcFcrg1A54ozA"><img src="https://private-user-images.githubusercontent.com/7339051/389728692-dc3d1651-1ad0-45d0-a407-49c4b7a41b85.gif?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.F0KvoYg27icwFV-OQ_Rk5_NQUq-TlYzcFcrg1A54ozA" alt="1732541491294" content-type-secured-asset="image/gif" style="max-width: 100%;"></a></li> </ul> </li> <li> <p><a href="https://github.com/Project-MONAI/MONAILabel/tree/main/plugins/ohifv3">OHIF V3 3.9+</a></p> <ul> <li>Refactored Plugin to support latest OHIF V3 3.9+ version</li> <li>Auto Segmentation</li> <li>Point Prompts (Deepgrow/DeepEdit/SAM2) models</li> <li>Class Prompts (Subset of classes as part of Auto Segmentation)<br> <a target="_blank" rel="noopener noreferrer" href="https://private-user-images.githubusercontent.com/7339051/389728835-58d09d7f-bdac-457c-ad96-24f474eee42e.gif?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.JmYxQLIokn64PtMGd8-wzYCeMGRoZY6rtdKxgRzG190"><img src="https://private-user-images.githubusercontent.com/7339051/389728835-58d09d7f-bdac-457c-ad96-24f474eee42e.gif?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.JmYxQLIokn64PtMGd8-wzYCeMGRoZY6rtdKxgRzG190" alt="1732541491894" content-type-secured-asset="image/gif" style="max-width: 100%;"></a></li> </ul> </li> <li> <p><a href="https://github.com/Project-MONAI/MONAILabel/tree/main/plugins/cvat">CVAT</a></p> <ul> <li>Refactored Plugin to support latest CVAT version</li> <li>SAM2 model via MONAI Label<br> <a target="_blank" rel="noopener noreferrer" href="https://private-user-images.githubusercontent.com/7339051/389729334-b5e57d14-106f-4de3-bbab-2c38bf8fe98c.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.woF63eeOVRzP80W4MnBYEi5j3C-zKCOGCEchK294ROA"><img src="https://private-user-images.githubusercontent.com/7339051/389729334-b5e57d14-106f-4de3-bbab-2c38bf8fe98c.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.woF63eeOVRzP80W4MnBYEi5j3C-zKCOGCEchK294ROA" alt="unnamed" content-type-secured-asset="image/png" style="max-width: 100%;"></a></li> </ul> </li> <li> <p>Python 3.12 support</p> </li> </ul> <h4>Changed</h4> <ul> <li>CVAT Plugin - MONAI Label will serve the inference logic and nuclio function will only at as as wrapper.</li> <li>Base Image for docker is ubuntu:22.04 (for saving the space)</li> <li>Documentation Fixes</li> </ul> <h4>Removed</h4> <ul> <li>Python 3.8 support</li> </ul> SachidanandAlle tag:github.com,2008:Repository/351826770/0.8.5rc2 2024-11-23T02:48:39Z <ul> <li>First draft - support latest ohif 3.10.x</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Fix probe tool</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Fix remove server uri</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Add options/config dialog + fix 2D segment</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Fix monailable mode visibility</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Fix toolbar + viewinfo constants</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Add Active Learning Section</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>[pre-commit.ci] auto fixes from pre-commit.com hooks</li> </ul> <p>for more information, see <a href="https://pre-commit.ci" rel="nofollow">https://pre-commit.ci</a></p> <ul> <li>Add copyright header</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Fix review comments</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>verify sam2 only once in integration tests</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <hr> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a><br> Co-authored-by: pre-commit-ci[bot] &lt;66853113+pre-commit-ci[bot]@users.noreply.github.com&gt;</p> SachidanandAlle tag:github.com,2008:Repository/351826770/0.8.5rc1 2024-11-08T09:20:25Z <ul> <li>SAM-2 as extra dependency for PyPi</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Disable release test once</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Fix release build</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Fix release build</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Fix github sam2 packaging for PyPI release</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Fix build error</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <ul> <li>Fix build error</li> </ul> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> <hr> <p>Signed-off-by: Sachidanand Alle <a href="mailto:salle@nvidia.com">salle@nvidia.com</a></p> SachidanandAlle tag:github.com,2008:Repository/351826770/0.8.4 2024-10-17T22:32:00Z <h3><strong>What's New:</strong></h3> <ul> <li> <p><strong>VISTA2D Dependencies Added</strong>:</p> <ul> <li>Added dependencies for VISTA2D, ensuring enhanced compatibility and performance when using this feature.</li> </ul> </li> <li> <p><strong>Cellprofiler App and Plugin</strong>:</p> <ul> <li>The Cellprofiler app has been integrated along with a corresponding plugin, enabling new workflows for image analysis.</li> </ul> </li> </ul> <h3><strong>Enhancements:</strong></h3> <ul> <li> <p><strong>Release Checks and Updates</strong>:</p> <ul> <li>Updates and improvements made in preparation for the 0.8.4 release.</li> </ul> </li> <li> <p><strong>Allow Newer Versions of Dependencies</strong>:</p> <ul> <li>Newer versions of key dependencies are now supported, improving compatibility across a wider range of environments.</li> </ul> </li> <li> <p><strong>Replace Deprecated IgniteMetric with IgniteMetricHandler</strong>:</p> <ul> <li>The deprecated <code>IgniteMetric</code> has been replaced with <code>IgniteMetricHandler</code> to keep up with library updates and prevent potential issues.</li> </ul> </li> <li> <p><strong>MITK Platform Support</strong>:</p> <ul> <li>MITK has been officially added as a supported platform, expanding the tool's versatility in medical image processing.</li> </ul> </li> </ul> <h3><strong>Bug Fixes:</strong></h3> <ul> <li> <p><strong>Fix Non-Standard English Double-Colons</strong>:</p> <ul> <li>Addressed issues with non-standard English double colons, ensuring improved consistency in documentation and messaging.</li> </ul> </li> <li> <p><strong>Fix Bug with Nuclio Docker Container Directory</strong>:</p> <ul> <li>Resolved a bug in the Nuclio Docker container that could cause directory-related errors, ensuring smoother execution in Docker environments.</li> </ul> </li> </ul> <h3><strong>Dependency Updates:</strong></h3> <ul> <li> <p><strong>Bump <code>requests</code> Library</strong>:</p> <ul> <li>The <code>requests</code> library was updated from <code>2.31.0</code> to <code>2.32.2</code>, addressing security and bug fixes.</li> </ul> </li> <li> <p><strong>Bump <code>urllib3</code> Library</strong>:</p> <ul> <li>The <code>urllib3</code> library was updated from <code>2.2.1</code> to <code>2.2.2</code> to fix known issues and maintain security compliance.</li> </ul> </li> <li> <p><strong>Pre-commit Hooks Update</strong>:</p> <ul> <li>Updated <code>pre-commit</code> hooks to the latest versions, ensuring consistency in code linting and formatting across the project.</li> </ul> </li> </ul> <h3><strong>Other Changes:</strong></h3> <ul> <li> <p><strong>Add Test Case for OpenCV Installation</strong>:</p> <ul> <li>Introduced a test case to ensure both scenarios are enabled when OpenCV is installed, improving test coverage.</li> </ul> </li> <li> <p><strong>Fix cv2 Dependency Issues</strong>:</p> <ul> <li>Resolved conflicts related to the <code>cv2</code> library to ensure smooth functionality in different environments.</li> </ul> </li> </ul> tangy5 tag:github.com,2008:Repository/351826770/0.8.4rc3 2024-10-08T15:37:57Z <p>realease candidate of version 0.8.4rc3</p> SachidanandAlle tag:github.com,2008:Repository/351826770/0.8.4rc2 2024-09-09T13:17:09Z <p>Release Candidate for version 0.8.4rc2</p> tangy5 tag:github.com,2008:Repository/351826770/0.8.4rc1 2024-07-29T18:09:28Z <p>Release Candidate for 0.8.4 monaitoolkit tests</p> tangy5 tag:github.com,2008:Repository/351826770/0.8.3 2024-07-23T17:48:05Z <h2>What's Changed</h2> <ul> <li>Add no scribbles model</li> <li>Mark translatable strings MONAILabel 3D Slicer Extension</li> <li>Bump actions/setup-node</li> <li>Fixing <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2017090098" data-permission-text="Title is private" data-url="https://github.com/Project-MONAI/MONAILabel/issues/1601" data-hovercard-type="issue" data-hovercard-url="/Project-MONAI/MONAILabel/issues/1601/hovercard" href="https://github.com/Project-MONAI/MONAILabel/issues/1601">#1601</a> - missing server URL error when doing inference</li> <li>Updated pydantic version</li> <li>Bump github/codeql-action</li> <li>Bump actions/upload-artifact</li> <li>Bump actions/setup-python</li> <li>Update version with remove requests and requests-toolbelt version limit</li> <li>Adding save label function to xnat datastore</li> <li>Bump actions/cache</li> <li>Bump codecov/codecov-action</li> <li>Update package dependencies</li> <li>Fix response encoding to explicitly use UTF-8 for HTTP response data</li> <li>Update fastapi version</li> <li>update github monai model zoo config</li> <li>Update blossom-ci list</li> <li>Downgraded filelock version</li> <li>Fixed cv2</li> <li>Jwt package for 0.8.2</li> <li>Update bundle versions to avoid conflicts</li> <li>Update more bundle versions</li> </ul> tangy5 tag:github.com,2008:Repository/351826770/0.8.2rc7 2024-05-22T04:32:50Z <p>release 0.8.2rc7</p> tangy5 tag:github.com,2008:Repository/351826770/0.8.2rc6 2024-05-17T15:06:21Z <p>0.8.2 rc6</p> tangy5