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August 16, 2022 (Dev Meeting)
Behrooz Hashemian edited this page Aug 16, 2022
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10 revisions
| # | Owner | Title | Time (min) |
|---|---|---|---|
| 1 | Behrooz | AI in Pathology Challenges | 10 |
| 2 | Behrooz | HoVerNet best dataset (Pannuke, ConSep, CoNIC, Lizard, etc.) | 10 |
| 3 | Behrooz | MetaTensor for pathology | 30 |
| 4 | Gigon | Support and apply ICC profile to the decompressed image | 10 |
Prerna Dogra, Ziyue Xu, Gigon Bae, Lee Cooper, Michael Boone, Behrooz Hashemian, Jeff Baumes, David Manthey, Shan Raza, Gregory Lee
- AI in Pathology Challenges:
- Mayo Clinic STRIP AI Kaggle Challenge: providing a MONAI baseline
- Once a challenge is finished, we should get in contact with the best solutions and help to contribute to MONAI. This is what we already want to do with https://neurips22-cellseg.grand-challenge.org.
- CoNIC dataset for HoVerNet but need to be double checked if it is the same as Lizard dataset.
- MetaTensor:
- Affine is not being use in digital pathology community, so better to avoid having this a primary propterties.
- use x and y resolution
- having slide meta data matching OpenSlide
- Loading images at specific micron per pixel (mpp) rather than at specific level would be useful. Currently, cucim does not support that.
| PIC | Item |
|---|---|
| Behrooz/Shan | Sync with Simon on HoVerNet |
| Behrooz | Update the MetaTensor proposal and request for comments |
| Lee | Submit an issue on cucim repo for loading region at a specific mpp |