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[Auto3DSeg] Add mlflow support in autorunner. #7176

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merged 10 commits into from
Nov 2, 2023

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dongyang0122
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@dongyang0122 dongyang0122 commented Oct 31, 2023

Add MLflow support in AutoRunner Class.

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

Signed-off-by: dongy <dongy@nvidia.com>
dongy added 2 commits October 31, 2023 11:17
Signed-off-by: dongy <dongy@nvidia.com>
@dongyang0122 dongyang0122 changed the title [auto3dseg] Add mlflow support in autorunner. [Auto3DSeg] Add mlflow support in autorunner. Oct 31, 2023
monai/apps/auto3dseg/auto_runner.py Show resolved Hide resolved
monai/apps/auto3dseg/bundle_gen.py Outdated Show resolved Hide resolved
@myron
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myron commented Oct 31, 2023

I think this should be a part of kwargs of Autorunner, instead of adding more names parameters for very specific use case.

Then you check for it as
If kwargs.get('mlflow_url', None) is not None:

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drbeh commented Oct 31, 2023

I think this should be a part of kwargs of Autorunner, instead of adding more names parameters for very specific use case.

Then you check for it as If kwargs.get('mlflow_url', None) is not None:

@myron @dongyang0122 As the zen of python says "explicit is better than implicit". In my opinion, having more names means better documentation. Deferring to kwargs usually makes sense when dealing with a third party parameters that might change over time without our notice, but mlflow_tracking_uri is our parameter and we decide how to use it (although we are passing it to mlflow).

dongy and others added 4 commits October 31, 2023 16:48
Signed-off-by: dongy <dongy@nvidia.com>
Signed-off-by: dongy <dongy@nvidia.com>
Signed-off-by: dongy <dongy@nvidia.com>
@dongyang0122
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I think this should be a part of kwargs of Autorunner, instead of adding more names parameters for very specific use case.
Then you check for it as If kwargs.get('mlflow_url', None) is not None:

@myron @dongyang0122 As the zen of python says "explicit is better than implicit". In my opinion, having more names means better documentation. Deferring to kwargs usually makes sense when dealing with a third party parameters that might change over time without our notice, but mlflow_tracking_uri is our parameter and we decide how to use it (although we are passing it to mlflow).

I acknowledge the perspectives presented from both sides. Incorporating an input variable mlflow_tracking_uri would enhance parameter visibility and documentation, whereas including it under ‘kwargs’ could conserve script space. Personally, I favor the first approach, though both methods are viable. Input from individuals @Nic-Ma and @daguangxu on this matter would be beneficial to finalize the decision.

dongy added 2 commits November 1, 2023 15:39
Signed-off-by: dongy <dongy@nvidia.com>
Signed-off-by: dongy <dongy@nvidia.com>
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Nic-Ma commented Nov 2, 2023

Hi @drbeh , @dongyang0122 ,

Do we have any usecase to allow users to set experiment_name? If no, I would vote for current implementation with mlflow_tracking_uri arg directly.

Thanks.

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Nic-Ma commented Nov 2, 2023

/black

@wyli
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wyli commented Nov 2, 2023

/build

@wyli wyli enabled auto-merge (squash) November 2, 2023 08:25
@wyli wyli disabled auto-merge November 2, 2023 08:41
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wyli commented Nov 2, 2023

/build

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wyli commented Nov 2, 2023

/build

@wyli wyli enabled auto-merge (squash) November 2, 2023 08:57
@wyli wyli merged commit c3f9914 into Project-MONAI:dev Nov 2, 2023
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marksgraham pushed a commit to marksgraham/MONAI that referenced this pull request Jan 30, 2024
Add MLflow support in AutoRunner Class.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: dongy <dongy@nvidia.com>
Signed-off-by: Mark Graham <markgraham539@gmail.com>
Yu0610 pushed a commit to Yu0610/MONAI that referenced this pull request Apr 11, 2024
Add MLflow support in AutoRunner Class.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: dongy <dongy@nvidia.com>
Signed-off-by: Yu0610 <612410030@alum.ccu.edu.tw>
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5 participants