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Merged
merged 36 commits into from
Jul 19, 2023
Merged

6612-support-mlflow-data-tracking #6616

merged 36 commits into from
Jul 19, 2023

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@binliunls
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@binliunls binliunls commented Jun 14, 2023

Fixes #6612 .

Description

Add the dataset tracking support to MLFlow handler.

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

binliunls and others added 22 commits June 14, 2023 13:10
@binliunls
add data tracking to MLFlowHandler
093a254 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix format
e22a8d0 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
Merge branch 'Project-MONAI:dev' into 6612-support-mlflow-data-tracking
10765e7
@binliunls
log the dataset to the mlflow ui
8075f34 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix the import order issue
5f6e158 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
remove the dataset log from the complete method.
6a5e395 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
Merge branch 'Project-MONAI:dev' into 6612-support-mlflow-data-tracking
20868d0
@binliunls
fix the unit test issue
def7cc9 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix the type hint issue
b2a7482 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix the format issue
5219a6c 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
add the type hint for the input parameter
a2d857c 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix the format issue
a5a3801 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix the codeformat issue
8a3186e 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix the fl monai algo unit test issue
d0ec3bb 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
split the warning info to shorter strings
dc0d24f 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
Merge branch 'dev' into 6612-support-mlflow-data-tracking
903e442
@binliunls
Update the comments and warning messages in the code.
acd75f5 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
Add the link to PandasDataset.
f16d1ef 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
add the unit test case
93777e6 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix the format issue in the unit test
657cb0f 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
add the mlflow version requirement.
d514256 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
Merge branch 'dev' into 6612-support-mlflow-data-tracking
41f4c78
@binliunls binliunls changed the title [WIP]6612-support-mlflow-data-tracking 6612-support-mlflow-data-tracking Jun 29, 2023
@binliunls binliunls marked this pull request as ready for review June 29, 2023 16:23
@binliunls binliunls requested review from Nic-Ma and wyli June 29, 2023 16:24
wyli
wyli reviewed Jul 4, 2023
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wyli
wyli reviewed Jul 4, 2023
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@wyli wyli requested a review from ericspod July 4, 2023 13:21
Nic-Ma
Nic-Ma reviewed Jul 4, 2023
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@Nic-Ma Nic-Ma requested a review from KumoLiu July 4, 2023 13:26
KumoLiu
KumoLiu reviewed Jul 5, 2023
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KumoLiu
KumoLiu reviewed Jul 5, 2023
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binliunls added 6 commits July 5, 2023 08:24
@binliunls
add the skip_if_downloading_fails context manager to the test case.
58d975b 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
update mlflow handler according to the reviewers opinions.
08e31c8 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
update the test case
87edbb8 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix the format issue
0ffd97c 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
make tqdm as optional import
556618b 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix the mypy issue
9709303 
Signed-off-by: binliu <binliu@nvidia.com>
KumoLiu
KumoLiu reviewed Jul 8, 2023
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Nic-Ma
Nic-Ma reviewed Jul 10, 2023
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binliunls and others added 4 commits July 10, 2023 09:19
@binliunls
Remove the dataset_log parameter
83d8d6f 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
Remove the dataset log settings from the default MLFlow setting.
cf83a7e 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
fix the format issue
83ca9ff 
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls
Merge branch 'dev' into 6612-support-mlflow-data-tracking
616c3ba
KumoLiu
KumoLiu reviewed Jul 18, 2023
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KumoLiu
KumoLiu approved these changes Jul 18, 2023
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Other parts LGTM, do we need to pending this one since the experimental features? cc @wyli, @Nic-Ma, @ericspod.

@wyli
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wyli commented Jul 19, 2023

/build

wyli
wyli approved these changes Jul 19, 2023
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Thanks, it looks good to me, could you please confirm and resolve the comments?

@wyli wyli enabled auto-merge (squash) July 19, 2023 06:52
@wyli wyli merged commit 3247db0 into Project-MONAI:dev Jul 19, 2023
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@Nic-Ma Nic-Ma Nic-Ma left review comments

@KumoLiu KumoLiu KumoLiu approved these changes

@wyli wyli wyli approved these changes

@ericspod ericspod Awaiting requested review from ericspod ericspod is a code owner

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Support the MLFlfow data tracking in MONAI

4 participants

@binliunls @wyli @Nic-Ma @KumoLiu