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@wyli wyli commented Feb 7, 2023

Signed-off-by: Wenqi Li wenqil@nvidia.com

Fixes #5935

Description

assigning out_d[idx] in the __call__ shouldn't change self.pixdim in Spacing

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
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wyli commented Feb 8, 2023

/build

@wyli wyli enabled auto-merge (squash) February 8, 2023 08:39
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
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wyli commented Feb 8, 2023

/build

@wyli wyli merged commit 3a3f6c4 into Project-MONAI:dev Feb 8, 2023
@wyli wyli deleted the fixes-inplace-5935 branch February 8, 2023 11:05
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myron commented Feb 26, 2023

I struggled to find this bug for many hours in monai1.1
Spacing / Resampling transform changed the resolution randomly , in my case when using min_pixdim, max_pixdim, and Dataloader with several workers, each worker can potentially change the self.pixdim, and next image gets wrong result...
Thanks for fixing it.

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wyli commented Feb 26, 2023

I struggled to find this bug for many hours in monai1.1 Spacing / Resampling transform changed the resolution randomly , in my case when using min_pixdim, max_pixdim, and Dataloader with several workers, each worker can potentially change the self.pixdim, and next image gets wrong result... Thanks for fixing it.

Thanks for reporting. I hope there's a method to document recent unreleased bug fixes, it may save you some time. Currently we are not really using this unreleased section of the changelog https://github.com/Project-MONAI/MONAI/blob/dev/CHANGELOG.md#unreleased cc@Nic-Ma

@xxsxxsxxs666 really helped a lot by creating a small script for reproducing the issue #5935.

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Why the data shape are different through transform "spacingd.

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