Closed
Description
Describe the bug
When reading the dicom series with LoadImage(itk backend) in MONAI transforms, it reported a bug shown below.
It only shows errors when there is only one file in the folder.
HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0:
#000: [/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fdeprec.c](https://vscode-remote+attached-002dcontainer-002b7b22636f6e7461696e65724e616d65223a222f62756e646c65222c2273657474696e6773223a7b22686f7374223a227373683a2f2f79756e6c69754031302e31392e3138332e3831227d7d.vscode-resource.vscode-cdn.net/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fdeprec.c) line 156 in itk_H5Fis_hdf5(): unable to determine if file is accessible as HDF5
major: File accessibility
minor: Not an HDF5 file
#001: [/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5VLcallback.c](https://vscode-remote+attached-002dcontainer-002b7b22636f6e7461696e65724e616d65223a222f62756e646c65222c2273657474696e6773223a7b22686f7374223a227373683a2f2f79756e6c69754031302e31392e3138332e3831227d7d.vscode-resource.vscode-cdn.net/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5VLcallback.c) line 3769 in itk_H5VL_file_specific(): file specific failed
major: Virtual Object Layer
minor: Can't operate on object
#002: [/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5VLcallback.c](https://vscode-remote+attached-002dcontainer-002b7b22636f6e7461696e65724e616d65223a222f62756e646c65222c2273657474696e6773223a7b22686f7374223a227373683a2f2f79756e6c69754031302e31392e3138332e3831227d7d.vscode-resource.vscode-cdn.net/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5VLcallback.c) line 3699 in H5VL__file_specific(): file specific failed
major: Virtual Object Layer
minor: Can't operate on object
#003: [/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5VLnative_file.c](https://vscode-remote+attached-002dcontainer-002b7b22636f6e7461696e65724e616d65223a222f62756e646c65222c2273657474696e6773223a7b22686f7374223a227373683a2f2f79756e6c69754031302e31392e3138332e3831227d7d.vscode-resource.vscode-cdn.net/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5VLnative_file.c) line 384 in itk_H5VL__native_file_specific(): error in HDF5 file check
major: File accessibility
minor: Unable to initialize object
#004: [/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fint.c](https://vscode-remote+attached-002dcontainer-002b7b22636f6e7461696e65724e616d65223a222f62756e646c65222c2273657474696e6773223a7b22686f7374223a227373683a2f2f79756e6c69754031302e31392e3138332e3831227d7d.vscode-resource.vscode-cdn.net/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fint.c) line 1086 in itk_H5F__is_hdf5(): error while trying to locate file signature
major: File accessibility
minor: Not an HDF5 file
#005: [/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c](https://vscode-remote+attached-002dcontainer-002b7b22636f6e7461696e65724e616d65223a222f62756e646c65222c2273657474696e6773223a7b22686f7374223a227373683a2f2f79756e6c69754031302e31392e3138332e3831227d7d.vscode-resource.vscode-cdn.net/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c) line 113 in itk_H5FD_locate_signature(): unable to read file signature
major: Low-level I/O
minor: Unable to initialize object
#006: [/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c](https://vscode-remote+attached-002dcontainer-002b7b22636f6e7461696e65724e616d65223a222f62756e646c65222c2273657474696e6773223a7b22686f7374223a227373683a2f2f79756e6c69754031302e31392e3138332e3831227d7d.vscode-resource.vscode-cdn.net/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c) line 189 in itk_H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#007: [/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDsec2.c](https://vscode-remote+attached-002dcontainer-002b7b22636f6e7461696e65724e616d65223a222f62756e646c65222c2273657474696e6773223a7b22686f7374223a227373683a2f2f79756e6c69754031302e31392e3138332e3831227d7d.vscode-resource.vscode-cdn.net/work/ITK-source/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDsec2.c) line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 5 05:46:15 2023
, filename = '/', file descriptor = 65, errno = 21, error message = 'Is a directory', buf = 0x7fffd2e1da68, total read size = 8, bytes this sub-read = 8, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
To Reproduce
Steps to reproduce the behavior:
- Install the MONAI dev branch.
- Download the attachment dcm file whose md5 is f511acb750076c56ad2d9647dcfe521d, put it in a folder.
- Run
from monai.transforms import LoadImage
loader = LoadImage()
loader('./test_data')
Expected behavior
itk can read dicom series successfully.