Some primer sequences:
PCR TCGTCGGCAGCGTCAGATGTG
RT TCGTCGGCAGCGTCAGATGTGNNNNNN
TSO TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGNNNNNNNNTATA(rG)(rG)(rG)
dirFMi AATGATACGGCGACCACCGAGATCTACACiiiiiiiiTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG
N7xx CAAGCAGAAGACGGCATACGAGATiiiiiiiiGTCTCGTGGGCTCGG
The RT
oligonucleotide primers the reverse-transcription of the mRNA and the
TSO
templates the extension of the first-strand cDNA. A single PCR
primer
amplifies the cDNAs. After tagmentation, the library is finally amplified with
indexed primers: dirFMi
matches the TSO sequence and N7xx
matches the
tagmentation ends.