TEMNet.def

Bootstrap: docker
From: tensorflow/tensorflow:2.1.2-gpu


%post
	# fixes error with tensorflow image
	rm /etc/apt/sources.list.d/cuda.list
	rm /etc/apt/sources.list.d/nvidia-ml.list

	# install updates and basic libraries
	apt-get update
	apt-get install -y git \
		wget \
		ffmpeg \
		libsm6 \
		libxext6

	# install python packages
	pip install keras==2.3.1 \
		opencv-python \
		matplotlib \
		h5py==2.10 \
		protobuf==3.8.0
	

%help
	Singularity container with python3.7
		tensorflow: 2.1
		keras: 2.3.1
		opencv-python
		matplotlib
		h5py: 2.10
		protobuf==3.8


	TO START:
	: singularity run --nv TEMNet.sif
	: git clone https://github.com/Perilla-lab/TEMNet.git

	If you already have a TEMNet folder you can include it
	in the container by adding --bind YOUR_FOLDER:/mnt to
	the singularity run statement.

	Now your folder will be found in the singularity /mnt
	folder.

%labels
	Maintainer "Gage Schuster <gageschu@udel.edu>"