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CI fails because /rest/v2/datasets/GSE110256/hasbatch requires admin role

Status: Open.

#96 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 28, 2024

Handle SRA experiments with multiple lanes mapped on distinct runs

Status: Open.

#94 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Jul 3, 2024

Reorganize high-level scripts into a rnaseq-pipeline-cli tool

enhancement

Status: Open.

#89 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 18, 2023

 ·  

2.2.0

Produce an error when fastq files are empty

Status: Open.

#88 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 18, 2023

Remove --clip and --skip-technical from fastq-dump

Status: Open.

#87 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 17, 2023

Include the webviewer tests on the CI

Status: Open.

#86 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 17, 2023

Report errors on the Slack channel

Status: Open.

#85 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Sep 25, 2023

Use of uninitialized value $doesOpen in numeric eq (==) at contrib/RSEM/rsem-calculate-expression line 574

bug

Status: Open.

#84 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Aug 28, 2023

Killed external tasks leave an empty error message

Status: Open.

#67 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Nov 10, 2021

Batch information that has been deemed unuseable are not considered completed

Status: Open.

#64 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Sep 11, 2021

Add a task to generate a summary of the tools, software and references used

Status: Open.

#63 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Aug 29, 2021

 ·  

2.2.0

Use luigi.TaskParameter for platforms and sources-specific tasks

enhancement

Status: Open.

#62 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Aug 16, 2021