You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Support an incoming factoid model entity type namedComplex that represents a complex. This differs from a factoid model entity type complex in that it has no components, and thus can be treated as a 'black-box'.
In factoid, namedComplex will have a FamPlex identifier. This can be used in an Xref (bp:UnificationXref) attached directly to it.
Alternative - Factoid converts namedComplex to complex
Could convert the namedComplex in Factoid to a regular complex in the outgoing BioPAX template. In this way, the BioPAX converter need only support black-box complexes with no components. An xref would still be available for tagging the complex instance with a UnificationXref.
Details
Google Doc 'Factoid binary interaction types' updates
Support in converter
Support an incoming factoid model entity type
namedComplex
that represents a complex. This differs from a factoid model entity typecomplex
in that it has no components, and thus can be treated as a 'black-box'.In factoid,
namedComplex
will have a FamPlex identifier. This can be used in an Xref (bp:UnificationXref
) attached directly to it.Alternative - Factoid converts namedComplex to complex
Could convert the
namedComplex
in Factoid to a regular complex in the outgoing BioPAX template. In this way, the BioPAX converter need only support black-box complexes with no components. An xref would still be available for tagging the complex instance with a UnificationXref.Details
Related to:
The text was updated successfully, but these errors were encountered: