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Merged
Junyi-99 merged 2 commits into from
Nov 20, 2025
Merged

feat: integrate xtramcp to backend #15

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6064e24
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Junyi-99 Nov 20, 2025
16ebbef
chore: k8s configs
Junyi-99 Nov 20, 2025
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4 changes: 4 additions & 0 deletions .github/workflows/release.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -95,6 +95,10 @@ jobs:
OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY_PRD }}
MCP_BASIC_KEY: ${{ secrets.MCP_BASIC_KEY_PRD }}
MCP_PAPERSCORE_KEY: ${{ secrets.MCP_PAPERSCORE_KEY_PRD }}
XTRAGPT_OPENAI_API_KEY: ${{ secrets.XTRAGPT_OPENAI_API_KEY_PRD }}
XTRAGPT_OPENREVIEW_BASE_URL: ${{ secrets.XTRAGPT_OPENREVIEW_BASE_URL_PRD }}
XTRAGPT_OPENREVIEW_USERNAME: ${{ secrets.XTRAGPT_OPENREVIEW_USERNAME_PRD }}
XTRAGPT_OPENREVIEW_PASSWORD: ${{ secrets.XTRAGPT_OPENREVIEW_PASSWORD_PRD }}
MONGO_URI: ${{ secrets.MONGO_URI_PRD }}
GHCR_DOCKER_CONFIG: ${{ secrets.GHCR_DOCKER_CONFIG_PRD }}
CLOUDFLARE_TUNNEL_TOKEN: ${{ secrets.CLOUDFLARE_TUNNEL_TOKEN_PRD }}
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8 changes: 8 additions & 0 deletions hack/dev-apply.sh
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Expand Up @@ -10,6 +10,10 @@ echo $ROOT_DIR
OPENAI_API_KEY=${OPENAI_API_KEY:-sk-dummy-OPENAI_API_KEY}
MCP_BASIC_KEY=${MCP_BASIC_KEY:-sk-dummy-MCP_BASIC_KEY}
MCP_PAPERSCORE_KEY=${MCP_PAPERSCORE_KEY:-sk-dummy-MCP_PAPERSCORE_KEY}
XTRAGPT_OPENAI_API_KEY=${XTRAGPT_OPENAI_API_KEY:-sk-dummy-XTRAGPT_OPENAI_API_KEY}
XTRAGPT_OPENREVIEW_BASE_URL=${XTRAGPT_OPENREVIEW_BASE_URL:-https://api2.openreview.net}
XTRAGPT_OPENREVIEW_USERNAME=${XTRAGPT_OPENREVIEW_USERNAME:-dummy-XTRAGPT_OPENREVIEW_USERNAME}
XTRAGPT_OPENREVIEW_PASSWORD=${XTRAGPT_OPENREVIEW_PASSWORD:-dummy-XTRAGPT_OPENREVIEW_PASSWORD}
GHCR_DOCKER_CONFIG=${GHCR_DOCKER_CONFIG:-dummy-ghcr-docker-config}
CLOUDFLARE_TUNNEL_TOKEN=${CLOUDFLARE_TUNNEL_TOKEN:-dummy-cloudflare-tunnel-token}

Expand All @@ -20,6 +24,10 @@ helm template $ROOT_DIR/helm-chart \
--set-string openai_api_key=$OPENAI_API_KEY \
--set-string mcp_basic_key=$MCP_BASIC_KEY \
--set-string mcp_paperscore_key=$MCP_PAPERSCORE_KEY \
--set-string xtragpt_openai_api_key=$XTRAGPT_OPENAI_API_KEY \
--set-string xtragpt_openreview_base_url=$XTRAGPT_OPENREVIEW_BASE_URL \
--set-string xtragpt_openreview_username=$XTRAGPT_OPENREVIEW_USERNAME \
--set-string xtragpt_openreview_password=$XTRAGPT_OPENREVIEW_PASSWORD \
--set-string ghcr_docker_config=$GHCR_DOCKER_CONFIG \
--set-string cloudflare_tunnel_token=$CLOUDFLARE_TUNNEL_TOKEN |
kubectl apply -f -
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8 changes: 8 additions & 0 deletions hack/prd.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,10 @@ cd $ROOT_DIR
OPENAI_API_KEY=${OPENAI_API_KEY:-sk-dummy-OPENAI_API_KEY}
MCP_BASIC_KEY=${MCP_BASIC_KEY:-sk-dummy-MCP_BASIC_KEY}
MCP_PAPERSCORE_KEY=${MCP_PAPERSCORE_KEY:-sk-dummy-MCP_PAPERSCORE_KEY}
XTRAGPT_OPENAI_API_KEY=${XTRAGPT_OPENAI_API_KEY:-sk-dummy-XTRAGPT_OPENAI_API_KEY}
XTRAGPT_OPENREVIEW_BASE_URL=${XTRAGPT_OPENREVIEW_BASE_URL:-https://api2.openreview.net}
XTRAGPT_OPENREVIEW_USERNAME=${XTRAGPT_OPENREVIEW_USERNAME:-dummy-XTRAGPT_OPENREVIEW_USERNAME}
XTRAGPT_OPENREVIEW_PASSWORD=${XTRAGPT_OPENREVIEW_PASSWORD:-dummy-XTRAGPT_OPENREVIEW_PASSWORD}
PAPERDEBUGGER_IMAGE=${PAPERDEBUGGER_IMAGE:-ghcr.io/paperdebugger/sharelatex-paperdebugger:latest}
MONGO_URI=${MONGO_URI:-}
GHCR_DOCKER_CONFIG=${GHCR_DOCKER_CONFIG:-dummy-ghcr-docker-config}
Expand All @@ -20,6 +24,10 @@ helm template $ROOT_DIR/helm-chart \
--set-string openai_api_key=$OPENAI_API_KEY \
--set-string mcp_basic_key=$MCP_BASIC_KEY \
--set-string mcp_paperscore_key=$MCP_PAPERSCORE_KEY \
--set-string xtragpt_openai_api_key=$XTRAGPT_OPENAI_API_KEY \
--set-string xtragpt_openreview_base_url=$XTRAGPT_OPENREVIEW_BASE_URL \
--set-string xtragpt_openreview_username=$XTRAGPT_OPENREVIEW_USERNAME \
--set-string xtragpt_openreview_password=$XTRAGPT_OPENREVIEW_PASSWORD \
--set-string paperdebugger.image=$PAPERDEBUGGER_IMAGE \
--set-string mongo.uri=$MONGO_URI \
--set-string ghcr_docker_config=$GHCR_DOCKER_CONFIG \
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8 changes: 8 additions & 0 deletions hack/stg.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,10 @@ cd $ROOT_DIR
OPENAI_API_KEY=${OPENAI_API_KEY:-sk-dummy-OPENAI_API_KEY}
MCP_BASIC_KEY=${MCP_BASIC_KEY:-sk-dummy-MCP_BASIC_KEY}
MCP_PAPERSCORE_KEY=${MCP_PAPERSCORE_KEY:-sk-dummy-MCP_PAPERSCORE_KEY}
XTRAGPT_OPENAI_API_KEY=${XTRAGPT_OPENAI_API_KEY:-sk-dummy-XTRAGPT_OPENAI_API_KEY}
XTRAGPT_OPENREVIEW_BASE_URL=${XTRAGPT_OPENREVIEW_BASE_URL:-https://api2.openreview.net}
XTRAGPT_OPENREVIEW_USERNAME=${XTRAGPT_OPENREVIEW_USERNAME:-dummy-XTRAGPT_OPENREVIEW_USERNAME}
XTRAGPT_OPENREVIEW_PASSWORD=${XTRAGPT_OPENREVIEW_PASSWORD:-dummy-XTRAGPT_OPENREVIEW_PASSWORD}
PAPERDEBUGGER_IMAGE=${PAPERDEBUGGER_IMAGE:-ghcr.io/paperdebugger/sharelatex-paperdebugger:latest}
MONGO_URI=${MONGO_URI:-}
GHCR_DOCKER_CONFIG=${GHCR_DOCKER_CONFIG:-dummy-ghcr-docker-config}
Expand All @@ -20,6 +24,10 @@ helm template $ROOT_DIR/helm-chart \
--set-string openai_api_key=$OPENAI_API_KEY \
--set-string mcp_basic_key=$MCP_BASIC_KEY \
--set-string mcp_paperscore_key=$MCP_PAPERSCORE_KEY \
--set-string xtragpt_openai_api_key=$XTRAGPT_OPENAI_API_KEY \
--set-string xtragpt_openreview_base_url=$XTRAGPT_OPENREVIEW_BASE_URL \
--set-string xtragpt_openreview_username=$XTRAGPT_OPENREVIEW_USERNAME \
--set-string xtragpt_openreview_password=$XTRAGPT_OPENREVIEW_PASSWORD \
--set-string paperdebugger.image=$PAPERDEBUGGER_IMAGE \
--set-string mongo.uri=$MONGO_URI \
--set-string ghcr_docker_config=$GHCR_DOCKER_CONFIG \
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54 changes: 54 additions & 0 deletions helm-chart/templates/paperdebugger-xtramcp-server.yaml
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@@ -0,0 +1,54 @@
---
apiVersion: apps/v1
kind: Deployment
metadata:
name: paperdebugger-xtramcp-server
namespace: {{ .Values.namespace }}
spec:
selector:
matchLabels:
app: paperdebugger-xtramcp-server
template:
metadata:
labels:
app: paperdebugger-xtramcp-server
spec:
imagePullSecrets:
- name: ghcr-secret
containers:
- name: paperdebugger-xtramcp-server
image: {{ .Values.paperdebuggerXtraMcpServer.image }}
imagePullPolicy: IfNotPresent
ports:
- containerPort: 8080
envFrom:
- configMapRef:
name: paperdebugger-xtramcp-server
---
apiVersion: v1
kind: Service
metadata:
name: paperdebugger-xtramcp-server
namespace: {{ .Values.namespace }}
spec:
selector:
app: paperdebugger-xtramcp-server
ports:
- name: http
port: 80
targetPort: 8080
- name: http-alt
port: 8080
targetPort: 8080
type: ClusterIP
---
apiVersion: v1
kind: ConfigMap
metadata:
name: paperdebugger-xtramcp-server
namespace: {{ .Values.namespace }}
data:
OPENAI_API_KEY: "{{ .Values.xtragpt_openai_api_key }}"
OPENREVIEW_BASE_URL: "{{ .Values.xtragpt_openreview_base_url }}"
OPENREVIEW_USERNAME: "{{ .Values.xtragpt_openreview_username }}"
OPENREVIEW_PASSWORD: "{{ .Values.xtragpt_openreview_password }}"
Comment on lines +45 to +54
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Copilot AI Nov 20, 2025

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Sensitive credentials should be stored in a Kubernetes Secret, not a ConfigMap. ConfigMaps are designed for non-sensitive configuration data and their values are not encrypted at rest by default.

The following sensitive values should be moved to a Secret resource:

  • OPENAI_API_KEY
  • OPENREVIEW_PASSWORD
  • Potentially OPENREVIEW_USERNAME (depending on security requirements)

Change the ConfigMap to a Secret:

---
apiVersion: v1
kind: Secret
metadata:
  name: paperdebugger-xtramcp-server
  namespace: {{ .Values.namespace }}
type: Opaque
stringData:
  OPENAI_API_KEY: "{{ .Values.xtragpt_openai_api_key }}"
  OPENREVIEW_BASE_URL: "{{ .Values.xtragpt_openreview_base_url }}"
  OPENREVIEW_USERNAME: "{{ .Values.xtragpt_openreview_username }}"
  OPENREVIEW_PASSWORD: "{{ .Values.xtragpt_openreview_password }}"

And update the deployment to reference the secret instead:

envFrom:
  - secretRef:
      name: paperdebugger-xtramcp-server

Copilot uses AI. Check for mistakes.
3 changes: 3 additions & 0 deletions helm-chart/values.yaml
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Expand Up @@ -10,6 +10,9 @@ paperdebugger:
paperdebuggerMcpServer:
image: ghcr.io/paperdebugger/paperdebugger-mcp-server:main-14409c5

paperdebuggerXtraMcpServer:
image: ghcr.io/paperdebugger/paperdebugger-xtramcp-server:main-14409c5

mongo:
in_cluster: true
uri: "" # if in_cluster is false, use the external mongo instead
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2 changes: 1 addition & 1 deletion internal/libs/cfg/cfg.go
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Expand Up @@ -33,7 +33,7 @@ func xtraMCPURI() string {
if val != "" {
return val
}
return "http://paperdebugger-xtra-mcp-server.com/mcp"
return "http://paperdebugger-xtramcp-server:8080/mcp"
}

func mongoURI() string {
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14 changes: 7 additions & 7 deletions webapp/_webapp/src/components/markdown.tsx
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Expand Up @@ -52,13 +52,13 @@ const MarkdownComponent = memo(({ children, prevAttachment, animated }: Markdown
</span>
),
},
p: {
component: ({ children, ...props }: ComponentProps) => (
<div {...props} className="mb-2 original-p">
<AnimatedText animated={animated}>{children}</AnimatedText>
</div>
),
},
// p: {
// component: ({ children, ...props }: ComponentProps) => (
// <div {...props} className="mb-2 original-p">
// <AnimatedText animated={animated}>{children}</AnimatedText>
// </div>
// ),
// },
h1: {
component: ({ children, ...props }: ComponentProps) => (
<div {...props} className="text-lg font-bold mt-2">
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2 changes: 1 addition & 1 deletion webapp/_webapp/src/index.css
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Expand Up @@ -92,7 +92,7 @@ body {
}

.tool-card.narrow {
@apply px-2 py-0 my-1 bg-transparent;
@apply px-2 py-1 my-1 bg-transparent;
}

.tool-card.animated {
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