chase_db1.py

# Copyright (c) 2021 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

import os

from paddleseg.utils.download import download_file_and_uncompress
from paddleseg.utils import seg_env
from paddleseg.cvlibs import manager
from paddleseg.transforms import Compose
from paddleseg.datasets import Dataset

URL = 'https://bj.bcebos.com/paddleseg/dataset/chase_db1/chase_db1.zip'


@manager.DATASETS.add_component
class CHASEDB1(Dataset):
    """
    CHASE_DB1 dataset is a dataset for retinal vessel segmentation
    which contains 28 color retina images with the size of 999×960 pixels.
    It is collected from both left and right eyes of 14 school children.
    Each image is annotated by two independent human experts, and we choose the labels from 1st expert.
    (https://blogs.kingston.ac.uk/retinal/chasedb1/)

    Args:
        transforms (list): Transforms for image.
        dataset_root (str): The dataset directory. Default: None
        edge (bool): whether extract edge infor in the output
        mode (str, optional): Which part of dataset to use. it is one of ('train', 'val', 'test'). Default: 'train'.
    """
    NUM_CLASSES = 2
    IGNORE_INDEX = 255
    IMG_CHANNELS = 3

    def __init__(self,
                 dataset_root=None,
                 transforms=None,
                 edge=False,
                 mode='train'):
        self.dataset_root = dataset_root
        self.transforms = Compose(transforms)
        mode = mode.lower()
        self.mode = mode
        self.edge = edge
        self.file_list = list()
        self.num_classes = self.NUM_CLASSES
        self.ignore_index = self.IGNORE_INDEX  # labels only have 1/0, thus ignore_index is not necessary

        if mode not in ['train', 'val', 'test']:
            raise ValueError(
                "`mode` should be 'train', 'val' or 'test', but got {}.".format(
                    mode))

        if self.transforms is None:
            raise ValueError("`transforms` is necessary, but it is None.")

        if self.dataset_root is None:
            self.dataset_root = download_file_and_uncompress(
                url=URL,
                savepath=seg_env.DATA_HOME,
                extrapath=seg_env.DATA_HOME)
        elif not os.path.exists(self.dataset_root):
            self.dataset_root = os.path.normpath(self.dataset_root)
            savepath, extraname = self.dataset_root.rsplit(
                sep=os.path.sep, maxsplit=1)
            self.dataset_root = download_file_and_uncompress(
                url=URL,
                savepath=savepath,
                extrapath=savepath,
                extraname=extraname)

        if mode == 'train':
            file_path = os.path.join(self.dataset_root, 'train_list.txt')
        elif mode == 'val':
            file_path = os.path.join(self.dataset_root, 'val_list.txt')

        with open(file_path, 'r') as f:
            for line in f:
                items = line.strip().split()
                if len(items) != 2:
                    if mode == 'train' or mode == 'val':
                        raise Exception(
                            "File list format incorrect! It should be"
                            " image_name label_name\\n")
                    image_path = os.path.join(self.dataset_root, items[0])
                    grt_path = None
                else:
                    image_path = os.path.join(self.dataset_root, items[0])
                    grt_path = os.path.join(self.dataset_root, items[1])
                self.file_list.append([image_path, grt_path])