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I'd recommend starting with this code base: https://github.com/PNNL-CompBio/BeatAMLproteomics/blob/main/pybeataml/run_models.ipynb
And extending to work with coderdata. then we can evaluate:
1- cancer blind splits
2- effects of balanced splits
3- ability to predict organoid response
then we can compare with the deep learning models.
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