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Update coderdata.yaml to include time and time_unit
added values toe xperiments.
1 parent ab73c03 commit cbed474

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Lines changed: 18 additions & 3 deletions

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schema/coderdata.yaml

Lines changed: 18 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -11,7 +11,7 @@ default_prefix: coderdata
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slots:
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entrez_id:
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description: Gene id according to NCIB
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description: Gene id according to NCBI
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range: integer
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improve_sample_id:
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description: Unique sample identifier for this dataset, generated by this package
@@ -22,10 +22,15 @@ slots:
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description: Unique identifier for this dataset, one for each smile string.
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identifier: true
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slot_uri: schema:identifier
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time:
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range: float
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description: Time at which measurement was administered, unit below.
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time_unit:
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description: Unit of time in which drug treatment was measured, e.g. minutes, hours, weeks.
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source:
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description: Source of data
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description: Source of data generated.
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study:
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description: study from which data is pooled
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description: Study informatiom identifying where/when data was collected.
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other_id:
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description: other identifier
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recommended: true
@@ -95,6 +100,8 @@ classes:
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- study
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attributes:
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transcriptomics:
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range: float
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description: Transcripts per million of sample at baseline.
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Proteomics:
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slots:
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- entrez_id
@@ -103,6 +110,8 @@ classes:
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- study
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attributes:
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proteomics:
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range: float
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description: Log-normalized log ratio of proteomics measurements of sample at baseline.
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Copy Number:
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slots:
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- entrez_id
@@ -112,8 +121,10 @@ classes:
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attributes:
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copy_number:
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range: float
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description: Copy number measurements of sample at baseline
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copy_call:
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range: CopyCall
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description: Categorical variable defining copy number measurement.
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Mutations:
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slots:
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- entrez_id
@@ -132,6 +143,8 @@ classes:
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- improve_sample_id
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- source
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- study
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- time
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- time_unit
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attributes:
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auc:
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range: float
@@ -164,6 +177,8 @@ classes:
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slots:
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- entrez_id
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- improve_sample_id
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- time
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- time_unit
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attributes:
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data_value:
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range: float

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