Computational Mass Spectrometry @ Pacific Northwest National Laboratory
- 107 followers
- Richland, WA
- https://omics.pnl.gov/software/
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Thermo-Raw-File-Reader
Thermo-Raw-File-Reader Public.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
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Informed-Proteomics
Informed-Proteomics PublicTop down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
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DeconTools
DeconTools PublicUsed to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.
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DB-Schema-Export-Tool
DB-Schema-Export-Tool PublicExports SQL Server and Postgres database objects as schema files. Exported objects include tables, views, stored procedures, and functions, plus also database properties including database roles an…
Repositories
- DMS-Dataset-Retriever Public
Copies DMS instrument data files to a local computer, organizing the files into subdirectories, and optionally renaming the files to use a new dataset name.
PNNL-Comp-Mass-Spec/DMS-Dataset-Retriever’s past year of commit activity - RomicsProcessor Public
R package that provides a structured R object to store and analyze omics data
PNNL-Comp-Mass-Spec/RomicsProcessor’s past year of commit activity - PRISM-Class-Library Public
The PRISM Class Library is a collection of routines used by many of the software tools that support the Data Management System at PNNL.
PNNL-Comp-Mass-Spec/PRISM-Class-Library’s past year of commit activity - DMS-Organism-Database-Handler Public
Organism Database (FASTA file) programs, including PRISMSeq Uploader and the FastaFileMaker console application
PNNL-Comp-Mass-Spec/DMS-Organism-Database-Handler’s past year of commit activity - Protein-Digestion-Simulator Public
Performs validation, transformation, and in-silico digestion of text files containing protein or peptide sequences (FASTA format or delimited text)
PNNL-Comp-Mass-Spec/Protein-Digestion-Simulator’s past year of commit activity - VSProj-NuGet-Version-Updater Public
Searches for Visual Studio project files (.csproj and.vsproj) that reference a specific NuGet package and updates the referenced version to a newer version if necessary.
PNNL-Comp-Mass-Spec/VSProj-NuGet-Version-Updater’s past year of commit activity - UIMF-Library Public
Used to create, modify and extract data from UIMF files, which are SQLite databases of mass spectrometry data acquired at Pacific Northwest National Laboratory (PNNL)
PNNL-Comp-Mass-Spec/UIMF-Library’s past year of commit activity
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