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shift float point by 2
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performance/gene_coverage_per_sample.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -12,8 +12,8 @@
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"""
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Title: gene_coverage_per_sample
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Creator: Jason Li
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Author: Jiaan Yu
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Date: 27-02-2020
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Modified: 23-06-2020 by Jiaan Yu
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This script groups coverage by gene per sample,
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it uses coverage stats (bedtools) from
@@ -142,7 +142,7 @@ def proc(procId, sample_list, geneObject, regionsObject, folds):
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"{:0.2f}".format(gene_depth[gene] / gene_len[gene]),
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str(min(gene_vals[gene])),
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str(max(gene_vals[gene])),
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] + ["{:0.2f}".format(f / gene_len[gene]) for f in gene_folds[gene]]
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] + ["{:0.2f}".format(f / gene_len[gene] * 100) for f in gene_folds[gene]]
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# print(",".join(row))
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with lock:
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geneObject.writerow(row)
@@ -154,7 +154,7 @@ def proc(procId, sample_list, geneObject, regionsObject, folds):
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"{:0.2f}".format(region_depth[reg] / region_len[reg]),
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str(min(region_vals[reg])),
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str(max(region_vals[reg])),
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] + ["{:0.2f}".format(f) for f in region_folds[reg]]
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] + ["{:0.2f}".format(f * 100) for f in region_folds[reg]]
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# print(",".join(row))
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with lock:
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regionsObject.writerow(row)

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