orphan: |
---|
- Are your target genomes and the scoring file in compatible builds?
--min_overlap
defaults to 0.75 (75% of variants in scoring file must be present in target genomes). Try changing this parameter!
Did you forget to set --max_cpu
or --max_memory?
You can also edit nextflow.config
to configure cpu and memory permanently.
pgsc_calc
bundles dependencies using containers or conda. Did you remember
to specify -profile
? e.g. nextflow run pgscatalog/pgsc_calc -profile
docker,test
Multiple profiles can be combined with a comma. The test profile is used only for checking the pipeline is installed and working correctly.