OpenwaterHealth
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diff --git a/‎notebooks/run_self_test.py‎
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+import asyncio
+import logging
+import sys
+
+from PyQt6.QtCore import Qt, pyqtSignal, pyqtSlot
+from PyQt6.QtGui import QBrush, QColor, QPainter
+from PyQt6.QtWidgets import QApplication, QLabel, QPushButton, QVBoxLayout, QWidget
+from qasync import QEventLoop
+
+from openlifu.io.LIFUInterface import LIFUInterface
+from openlifu.plan.solution import (  # Assuming Pulse is needed to create a Solution
+    Pulse,
+    Solution,
+)
+
+# Configure logging
+logging.basicConfig(level=logging.DEBUG, format="%(asctime)s - %(levelname)s - %(message)s")
+logger = logging.getLogger(__name__)
+
+
+class LIFUTestWidget(QWidget):
+    # Signals now accept two arguments: descriptor and port/data.
+    signal_connected = pyqtSignal(str, str)
+    signal_disconnected = pyqtSignal(str, str)
+    signal_data_received = pyqtSignal(str, str)
+
+    def __init__(self):
+        super().__init__()
+        self.interface = LIFUInterface(run_async=True)
+        # Maintain connection status for both descriptors
+        self.connections = {"TX": False, "HV": False}
+        self.treatment_running = False
+        self.init_ui()
+        self.connect_signals()
+
+    def init_ui(self):
+        """Initialize the UI components."""
+        self.setWindowTitle("Open LIFU")
+        self.setGeometry(100, 100, 300, 350)
+
+        # Status label shows connection status for both devices
+        self.status_label = QLabel("TX: Disconnected, HV: Disconnected", self)
+        self.status_label.setAlignment(Qt.AlignmentFlag.AlignCenter)
+
+        # Existing buttons
+        self.send_ping_button = QPushButton("Send Ping", self)
+        self.send_ping_button.setEnabled(False)
+        self.send_ping_button.clicked.connect(self.send_ping_command)
+
+        self.treatment_button = QPushButton("Run Treatment (Off)", self)
+        self.treatment_button.setEnabled(False)
+        self.treatment_button.clicked.connect(self.toggle_treatment_run)
+
+        # New buttons to call interface methods:
+        self.load_solution_button = QPushButton("Load Solution", self)
+        self.load_solution_button.clicked.connect(self.load_solution)
+
+        self.start_sonication_button = QPushButton("Start Sonication", self)
+        self.start_sonication_button.clicked.connect(self.start_sonication)
+
+        self.stop_sonication_button = QPushButton("Stop Sonication", self)
+        self.stop_sonication_button.clicked.connect(self.stop_sonication)
+
+        self.get_status_button = QPushButton("Get Status", self)
+        self.get_status_button.clicked.connect(self.get_status)
+
+        # Layout
+        layout = QVBoxLayout()
+        layout.addWidget(self.status_label)
+        layout.addWidget(self.send_ping_button)
+        layout.addWidget(self.treatment_button)
+        layout.addWidget(self.load_solution_button)
+        layout.addWidget(self.start_sonication_button)
+        layout.addWidget(self.stop_sonication_button)
+        layout.addWidget(self.get_status_button)
+        self.setLayout(layout)
+
+    def connect_signals(self):
+        """Connect the signals from the LIFU interface to the UI."""
+        # Connect TX signals
+        if hasattr(self.interface.txdevice, 'uart'):
+            self.interface.txdevice.uart.signal_connect.connect(self.signal_connected.emit)
+            self.interface.txdevice.uart.signal_disconnect.connect(self.signal_disconnected.emit)
+            self.interface.txdevice.uart.signal_data_received.connect(self.signal_data_received.emit)
+        else:
+            logger.warning("TX UART interface not found in LIFUInterface.")
+
+        # Connect HV signals
+        if hasattr(self.interface.hvcontroller, 'uart'):
+            self.interface.hvcontroller.uart.signal_connect.connect(self.signal_connected.emit)
+            self.interface.hvcontroller.uart.signal_disconnect.connect(self.signal_disconnected.emit)
+            self.interface.hvcontroller.uart.signal_data_received.connect(self.signal_data_received.emit)
+        else:
+            logger.warning("HV UART interface not found in LIFUInterface.")
+
+        # Connect our widget signals to slots
+        self.signal_connected.connect(self.on_connected)
+        self.signal_disconnected.connect(self.on_disconnected)
+        self.signal_data_received.connect(self.on_data_received)
+
+    async def start_monitoring(self):
+        """Start monitoring for USB device connections."""
+        await self.interface.start_monitoring()
+
+    @pyqtSlot(str, str)
+    def on_connected(self, descriptor, port):
+        """Handle the connected signal."""
+        self.connections[descriptor] = True
+        status_text = (
+            f"TX: {'Connected' if self.connections['TX'] else 'Disconnected'}, "
+            f"HV: {'Connected' if self.connections['HV'] else 'Disconnected'}"
+        )
+        self.status_label.setText(status_text)
+        # Enable buttons if TX is connected (assuming TX is needed for ping/treatment)
+        if self.connections["TX"]:
+            self.send_ping_button.setEnabled(True)
+            self.treatment_button.setEnabled(True)
+        self.update()
+
+    @pyqtSlot(str, str)
+    def on_disconnected(self, descriptor, port):
+        """Handle the disconnected signal."""
+        self.connections[descriptor] = False
+        status_text = (
+            f"TX: {'Connected' if self.connections['TX'] else 'Disconnected'}, "
+            f"HV: {'Connected' if self.connections['HV'] else 'Disconnected'}"
+        )
+        self.status_label.setText(status_text)
+        # Disable TX buttons if TX is disconnected
+        if not self.connections["TX"]:
+            self.send_ping_button.setEnabled(False)
+            self.treatment_button.setEnabled(False)
+        self.update()
+
+    @pyqtSlot(str, str)
+    def on_data_received(self, descriptor, data):
+        """Handle the data received signal."""
+        self.status_label.setText(f"{descriptor} Received: {data}")
+        self.update()
+
+    def send_ping_command(self):
+        """Send a ping command on the TX device."""
+        if hasattr(self.interface.txdevice, 'ping'):
+            self.interface.txdevice.ping()
+        else:
+            logger.warning("TX device does not support ping.")
+
+    def toggle_treatment_run(self):
+        """Toggle the treatment run state."""
+        self.interface.toggle_treatment_run(self.treatment_running)
+        self.treatment_running = not self.treatment_running
+        self.treatment_button.setText(
+            "Run Treatment (On)" if self.treatment_running else "Stop Treatment (Off)"
+        )
+
+    def load_solution(self):
+        """Call the interface's set_solution method using a dummy solution."""
+        try:
+            # Create a fake solution for testing
+            fake_solution = Solution(name="Test Solution", pulse=Pulse(amplitude=5))
+            result = self.interface.set_solution(fake_solution)
+            if result:
+                self.status_label.setText("Solution loaded successfully.")
+            else:
+                self.status_label.setText("Failed to load solution.")
+        except Exception as e:
+            self.status_label.setText(f"Error loading solution: {e}")
+            logger.error("Error loading solution: %s", e)
+
+    def start_sonication(self):
+        """Call the interface's start_sonication method."""
+        try:
+            result = self.interface.start_sonication()
+            if result:
+                self.status_label.setText("Sonication started.")
+            else:
+                self.status_label.setText("Failed to start sonication.")
+        except Exception as e:
+            self.status_label.setText(f"Error starting sonication: {e}")
+            logger.error("Error starting sonication: %s", e)
+
+    def stop_sonication(self):
+        """Call the interface's stop_sonication method."""
+        try:
+            result = self.interface.stop_sonication()
+            if result:
+                self.status_label.setText("Sonication stopped.")
+            else:
+                self.status_label.setText("Failed to stop sonication.")
+        except Exception as e:
+            self.status_label.setText(f"Error stopping sonication: {e}")
+            logger.error("Error stopping sonication: %s", e)
+
+    def get_status(self):
+        """Call the interface's get_status method and display the status."""
+        try:
+            status = self.interface.get_status()
+            self.status_label.setText(f"Status: {status}")
+        except Exception as e:
+            self.status_label.setText(f"Error getting status: {e}")
+            logger.error("Error getting status: %s", e)
+
+    def paintEvent(self, event):
+        """Draw the connection status indicator."""
+        painter = QPainter(self)
+        painter.setRenderHint(QPainter.RenderHint.Antialiasing)
+        dot_radius = 20
+        dot_color = QColor("green") if any(self.connections.values()) else QColor("red")
+        brush = QBrush(dot_color)
+        painter.setBrush(brush)
+        rect = self.rect()
+        painter.drawEllipse(
+            rect.center().x() - dot_radius // 2,
+            rect.top() + 20,
+            dot_radius,
+            dot_radius
+        )
+
+    def closeEvent(self, event):
+        """Handle application closure."""
+        self.cleanup_task = asyncio.create_task(self.cleanup_tasks())
+        super().closeEvent(event)
+
+    async def cleanup_tasks(self):
+        """Stop monitoring and cancel running tasks."""
+        self.interface.stop_monitoring()
+        loop = asyncio.get_running_loop()
+        tasks = [t for t in asyncio.all_tasks(loop) if t is not asyncio.current_task()]
+        for task in tasks:
+            task.cancel()
+        await asyncio.gather(*tasks, return_exceptions=True)
+
+
+if __name__ == "__main__":
+    app = QApplication(sys.argv)
+    loop = QEventLoop(app)
+    asyncio.set_event_loop(loop)
+
+    widget = LIFUTestWidget()
+    widget.show()
+
+    async def main():
+        await widget.start_monitoring()
+
+    with loop:
+        widget._monitor_task = asyncio.ensure_future(main())
+        loop.run_forever()
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+from openlifu.io.LIFUInterface import LIFUInterface
+
+# set PYTHONPATH=%cd%\src;%PYTHONPATH%
+# python notebooks/run_self_test.py
+"""
+Test script to automate:
+1. Connect to the device.
+2. Test HVController: Turn HV on/off and check voltage.
+3. Test Device functionality.
+"""
+print("Starting LIFU Test Script...")
+interface = LIFUInterface(test_mode=False)
+tx_connected, hv_connected = interface.is_device_connected()
+if tx_connected and hv_connected:
+    print("LIFU Device Fully connected.")
+else:
+    print(f'LIFU Device NOT Fully Connected. TX: {tx_connected}, HV: {hv_connected}')
+
+print("Ping the device")
+interface.txdevice.ping()
+
+print("Run Self OneWire Test")
+interface.txdevice.run_test()
+
+print("Tests Finished")
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+import random
+
+from openlifu.io.LIFUInterface import LIFUInterface
+
+
+def run_test(interface, iterations):
+    """
+    Run the LIFU test loop with random trigger settings.
+
+    Args:
+        interface (LIFUInterface): The LIFUInterface instance.
+        iterations (int): Number of iterations to run.
+    """
+    for i in range(iterations):
+        print(f"Starting Test Iteration {i + 1}/{iterations}...")
+
+        try:
+            tx_connected, hv_connected = interface.is_device_connected()
+            if not tx_connected: # or not hv_connected:
+                raise ConnectionError(f"LIFU Device NOT Fully Connected. TX: {tx_connected}, HV: {hv_connected}")
+
+            print("Ping the device")
+            interface.txdevice.ping()
+
+            print("Toggle LED")
+            interface.txdevice.toggle_led()
+
+            print("Get Version")
+            version = interface.txdevice.get_version()
+            print(f"Version: {version}")
+
+            print("Echo Data")
+            echo, length = interface.txdevice.echo(echo_data=b'Hello LIFU!')
+            if length > 0:
+                print(f"Echo: {echo.decode('utf-8')}")
+            else:
+                raise ValueError("Echo failed.")
+
+            print("Get HW ID")
+            hw_id = interface.txdevice.get_hardware_id()
+            print(f"HWID: {hw_id}")
+
+            print("Get Temperature")
+            temperature = interface.txdevice.get_temperature()
+            print(f"Temperature: {temperature} °C")
+
+            print("Get Trigger")
+            trigger_setting = interface.txdevice.get_trigger()
+            if trigger_setting:
+                print(f"Trigger Setting: {trigger_setting}")
+            else:
+                raise ValueError("Failed to get trigger setting.")
+
+            print("Set Trigger with Random Parameters")
+            # Generate random trigger frequency and pulse width
+            trigger_frequency = random.randint(5, 25)  # Random frequency between 5 and 25 Hz
+            trigger_pulse_width = random.randint(10, 30) * 1000  # Random pulse width between 10 and 30 ms (convert to µs)
+
+            json_trigger_data = {
+                "TriggerFrequencyHz": trigger_frequency,
+                "TriggerMode": 1,
+                "TriggerPulseCount": 0,
+                "TriggerPulseWidthUsec": trigger_pulse_width
+            }
+            trigger_setting = interface.txdevice.set_trigger(data=json_trigger_data)
+            if trigger_setting:
+                print(f"Trigger Setting Applied: Frequency = {trigger_frequency} Hz, Pulse Width = {trigger_pulse_width // 1000} ms")
+                if trigger_setting["TriggerFrequencyHz"] != trigger_frequency or trigger_setting["TriggerPulseWidthUsec"] != trigger_pulse_width:
+                    raise ValueError("Failed to set trigger setting.")
+            else:
+                raise ValueError("Failed to set trigger setting.")
+
+            print(f"Iteration {i + 1} passed.\n")
+
+        except Exception as e:
+            print(f"Test failed on iteration {i + 1}: {e}")
+            break
+
+if __name__ == "__main__":
+    print("Starting LIFU Test Script...")
+    interface = LIFUInterface(test_mode=False)
+
+    # Number of iterations to run
+    test_iterations = 1000  # Change this to the desired number of iterations
+
+    run_test(interface, test_iterations)