Remove estimagic related files

[timmens]

Changes

• Move tranquilo folder directly under src
• Move subsolver folder in tranquilo
• Do the same for tests
• Remove all other estimagic files
• Adjust import paths
• Add new files and copy contents:
  • exploration_sample.py from tiktok.py
  • utilities.py from utilities.py
• Update configuration files, environment files, etc.
• Adjust tests to use functions from tranquilo not estimagic. Example
  • Before:

  minimize(..., algorithm="tranquilo")

  • Now:

  from tranquilo.tranquilo import tranquilo
  minimize(..., algorithm=tranquilo)

• Delete CITATION
• Update LICENSE
• Update CHANGES.md
• Put tranquilo in __init__.py
• Move wrapped_subsolver.py to subsolvers
• Adjust codecov

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[codecov]

Codecov Report

Merging #2 (3dc4d6d) into main (f66089d) will decrease coverage by 15.20%.
The diff coverage is n/a.

@@             Coverage Diff             @@
##             main       #2       +/-   ##
===========================================
- Coverage   93.24%   78.05%   -15.20%     
===========================================
  Files         247       68      -179     
  Lines       17987     4666    -13321     
===========================================
- Hits        16772     3642    -13130     
+ Misses       1215     1024      -191     

Impacted Files	Coverage Δ
src/tranquilo/__init__.py	100.00% <ø> (ø)
src/tranquilo/acceptance_decision.py	96.87% <ø> (ø)
src/tranquilo/acceptance_sample_size.py	95.45% <ø> (ø)
src/tranquilo/adjust_radius.py	100.00% <ø> (ø)
src/tranquilo/aggregate_models.py	97.67% <ø> (ø)
src/tranquilo/bounds.py	94.11% <ø> (ø)
src/tranquilo/clustering.py	23.80% <ø> (ø)
src/tranquilo/config.py	100.00% <ø> (ø)
src/tranquilo/estimate_variance.py	100.00% <ø> (ø)
src/tranquilo/exploration_sample.py	90.32% <ø> (ø)
... and 31 more

... and 127 files with indirect coverage changes

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[janosg]

Thanks a lot! I went over all the imports and a couple of places where I thought you might miss something. Looks very good! I would suggest a few more infrastructure simplifications:

• The rtd_environment has some redundant packages and is missing estimagic
• The folder docs/source/scripts can be deleted
• MANIFEST.in mentions .db files. I think we can remove that
• pytask and click can be removed from environment.yml
• pytask related options can be removed from pyproject.toml
• Some of the ignored warnings in pyproject.toml can be removed

I would suggest we merge quickly and get the new package up on PyPi and conda-forge. We don't have users yet and can always fix a few more rough edges later.