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Commits on Mar 27, 2025

• Bumping up patch version

  skchronicles

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  8e96914

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• Patch: Updating snakemake command so --use-conda/--use-singualarity are mutally exclusive options.

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  committed
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Commits on Mar 17, 2025

• Patch: disable reporting feature due to removal of next branch within vega/vega-embed, breaks snakemake reporting feature.

  skchronicles

  committed
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Commits on Jan 29, 2025

• Adding a filter for supplementary/chimeric reads

  skchronicles

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Commits on Jan 6, 2025

• Patch: Updating cluster.json to increase viralflye wall time

  skchronicles

  authored
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Commits on Dec 23, 2024

• Adding jobby to collect HPC job stats

  skchronicles

  committed
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Commits on May 31, 2024

• Updating docs and bump up minor version for new feat

  skchronicles

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  4d30e18

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• Adding cli options for assembly

  skchronicles

  committed
  7dc7d80

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• Adding new assembly rules to run viralFlye

  skchronicles

  committed
  9bf1b32

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• Adding new docker image and resource allocations for assembly

  skchronicles

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  ba4d137

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Commits on May 16, 2024

• Adding ViralFlye dependencies to Dockerfile

  skchronicles

  committed
  46310a0

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Commits on May 15, 2024

• Simplifying the conda deps for ViralFlye

  skchronicles

  committed
  e0f12f2

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Commits on May 14, 2024

• Adding new conda environment

  skchronicles

  committed
  bbd361a

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Commits on May 13, 2024

• Chore: adding extra resource bundle for viralFlye.

  skchronicles

  committed
  19201ed

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Commits on Apr 4, 2024

• Bump up patch version

  skchronicles

  committed
  8fa4a35

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• Patch: remove -r option to ln command due to macOS incompatibility

  skchronicles

  committed
  1d51ebe

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Commits on Nov 9, 2023

• Updating conda TLDR to include --use-conda option

  skchronicles

  authored
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Commits on Mar 22, 2023

• Fixing typos in setup docs

  skchronicles

  committed
  bfac219

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• Updating setup page and run sub command for new conda offline option

  skchronicles

  committed
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• Chore: bumping up minor version

  skchronicles

  committed
  8b8c8d6

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• feat: use an extisting, named conda environment

  skchronicles

  committed
  dec6117

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Commits on Jan 10, 2023

• Increase patch version

  skchronicles

  committed
  77da48e

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• Fix: use working directory config files

  skchronicles

  committed
  085f605

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• Updating conda env name

  skchronicles

  committed
  5757684

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• Display config file in gh actions

  skchronicles

  committed
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Commits on Jan 3, 2023

• Updating setup page link

  skchronicles

  authored
  aeb6c5b

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Commits on Dec 30, 2022

• Adding card-like links to each sub command

  skchronicles

  committed
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• Adding css for custom grid-like admonition

  skchronicles

  committed
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• Adding new light/dark mode icons

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  committed
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Commits on Dec 29, 2022

• Updating installation documentation, adding link to new page

  skchronicles

  authored
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• Adding TLDR quick start setup instructions

  skchronicles

  committed
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Commits on Dec 28, 2022

• Adding setup instructions to documentation

  skchronicles

  committed
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• Adding CITATION information

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Commits on Dec 23, 2022

• Fix: do not require singularity with --use-conda option

  skchronicles

  committed
  530bf47

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• Updating pymarkdown extensions for superfences support

  skchronicles

  authored
  2138843

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