Skip to content

Commit b01e71f

Browse files
authored
New notebook for VCM 29c dataset
1 parent a6940da commit b01e71f

File tree

8 files changed

+258534
-1716
lines changed

8 files changed

+258534
-1716
lines changed

docs/SNP_29C_VCM/SNP_29C.bed

12.8 MB
Binary file not shown.

docs/SNP_29C_VCM/SNP_29C.bim

Lines changed: 253141 additions & 0 deletions
Large diffs are not rendered by default.

docs/SNP_29C_VCM/SNP_29C.fam

Lines changed: 212 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,212 @@
1+
1 16 NA NA 2
2+
1 8228 NA NA 2
3+
1 17008 NA NA 1
4+
1 9218 17008 16 1
5+
1 3226 9218 8228 2
6+
2 29 NA NA 2
7+
2 2294 NA NA 1
8+
2 3416 NA NA 1
9+
2 17893 2294 29 2
10+
2 6952 3416 17893 1
11+
2 14695 2294 29 2
12+
2 6790 2294 29 1
13+
2 3916 2294 29 2
14+
3 39 NA NA 2
15+
3 4521 NA NA 2
16+
3 8366 NA NA 1
17+
3 16693 NA NA 2
18+
3 21688 8366 16693 1
19+
3 25532 21688 39 2
20+
3 26294 21688 39 1
21+
3 16795 21688 39 2
22+
3 17445 8366 16693 1
23+
3 2039 17445 4521 1
24+
3 2831 8366 16693 1
25+
4 54 NA NA 2
26+
4 5072 NA NA 1
27+
4 17240 5072 54 2
28+
5 70 NA NA 2
29+
5 24010 NA NA 1
30+
5 21999 24010 70 1
31+
8 109 NA NA 1
32+
8 7395 NA NA 2
33+
8 19099 109 7395 1
34+
8 13234 109 7395 2
35+
8 12043 109 7395 2
36+
8 5226 109 7395 1
37+
10 141 NA NA 2
38+
10 16886 NA NA 1
39+
10 6825 16886 141 2
40+
10 480 16886 141 2
41+
11 182 NA NA 1
42+
11 4117 NA NA 2
43+
11 13854 NA NA 2
44+
11 19440 NA NA 1
45+
11 20318 NA NA 2
46+
11 25910 19440 13854 1
47+
11 21515 19440 13854 2
48+
11 11280 182 21515 2
49+
11 7670 182 21515 1
50+
11 12003 19440 13854 1
51+
11 14143 12003 4117 1
52+
11 15898 14143 20318 1
53+
11 10579 14143 20318 2
54+
11 18979 12003 4117 2
55+
11 6244 14143 20318 2
56+
14 264 NA NA 2
57+
14 16636 NA NA 1
58+
14 26732 NA NA 1
59+
14 12511 16636 264 2
60+
14 4078 16636 264 2
61+
14 25732 26732 4078 1
62+
17 309 NA NA 2
63+
17 6637 NA NA 1
64+
17 11879 NA NA 2
65+
17 19275 NA NA 1
66+
17 22601 NA NA 1
67+
17 24818 NA NA 1
68+
17 26856 NA NA 1
69+
17 26857 NA NA 1
70+
17 19113 6637 309 2
71+
17 19235 22601 19113 2
72+
17 6932 22601 19113 1
73+
17 11361 22601 19113 2
74+
17 12004 6637 309 2
75+
17 18645 26856 12004 1
76+
17 22301 26857 12004 1
77+
17 7098 6637 309 1
78+
17 12785 7098 11879 1
79+
17 19176 7098 11879 2
80+
17 10418 7098 11879 1
81+
17 16612 7098 11879 1
82+
17 908 7098 11879 1
83+
17 1649 24818 309 2
84+
17 20334 19275 1649 1
85+
19 352 NA NA 2
86+
19 720 NA NA 1
87+
19 16617 NA NA 2
88+
19 18679 NA NA 2
89+
19 25222 NA NA 1
90+
19 26591 720 352 2
91+
19 1706 25222 26591 1
92+
19 13367 25222 26591 2
93+
19 19856 720 352 1
94+
19 3593 720 352 1
95+
19 8344 3593 18679 2
96+
19 23699 3593 18679 1
97+
19 2500 3593 18679 2
98+
19 9513 3593 18679 1
99+
19 2145 720 352 1
100+
19 14432 2145 16617 1
101+
19 22375 2145 16617 1
102+
19 10272 2145 16617 1
103+
22 384 NA NA 2
104+
22 2381 NA NA 1
105+
22 6894 NA NA 1
106+
22 14412 NA NA 2
107+
22 22190 NA NA 2
108+
22 24468 2381 384 1
109+
22 23690 6894 14412 2
110+
22 6208 6894 14412 2
111+
22 18921 24468 6208 2
112+
22 10130 24468 6208 1
113+
23 392 NA NA 1
114+
23 743 NA NA 2
115+
23 7079 NA NA 2
116+
23 25566 NA NA 2
117+
23 25997 NA NA 1
118+
23 26274 392 743 2
119+
23 18694 25997 26274 1
120+
23 5586 25997 26274 2
121+
23 25256 392 743 1
122+
23 19279 392 743 1
123+
23 3760 392 743 1
124+
23 17654 3760 7079 1
125+
23 25271 3760 7079 2
126+
23 22743 3760 7079 2
127+
23 3121 392 743 1
128+
23 9943 3121 25566 2
129+
23 18496 3121 25566 2
130+
23 283 392 743 2
131+
24 394 NA NA 2
132+
24 22156 NA NA 1
133+
24 19621 NA NA 2
134+
24 13575 22156 394 1
135+
24 10817 13575 19621 2
136+
24 15061 13575 19621 1
137+
24 1018 22156 394 2
138+
25 398 NA NA 2
139+
25 3016 NA NA 1
140+
25 22041 NA NA 1
141+
25 23404 NA NA 1
142+
25 22711 3016 398 2
143+
25 3012 22041 22711 2
144+
25 15940 22041 22711 1
145+
25 5229 22041 22711 2
146+
25 5299 3016 398 2
147+
25 11822 23404 5299 1
148+
25 24192 23404 5299 1
149+
25 1269 23404 5299 1
150+
25 3094 3016 398 1
151+
27 437 NA NA 2
152+
27 10069 NA NA 1
153+
27 11621 NA NA 2
154+
27 14123 NA NA 2
155+
27 23649 10069 437 1
156+
27 17951 23649 11621 1
157+
27 17917 17951 14123 2
158+
28 443 NA NA 2
159+
28 9782 NA NA 1
160+
28 21962 9782 443 1
161+
28 15617 9782 443 1
162+
29 444 NA NA 2
163+
29 14219 NA NA 1
164+
29 18775 NA NA 1
165+
29 548 14219 444 2
166+
29 5986 18775 548 1
167+
29 2154 18775 548 1
168+
29 14640 18775 548 2
169+
31 5777 NA NA 2
170+
31 6885 NA NA 2
171+
31 9381 NA NA 1
172+
31 13772 NA NA 2
173+
31 14586 NA NA 2
174+
31 17673 NA NA 1
175+
31 23058 NA NA 1
176+
31 24094 NA NA 1
177+
31 24938 NA NA 1
178+
31 26817 NA NA 1
179+
31 27016 NA NA 1
180+
31 27017 NA NA 1
181+
31 19392 26817 13772 2
182+
31 10472 24094 6885 2
183+
31 21403 27016 10472 2
184+
31 12608 27017 10472 2
185+
31 13725 23058 12608 2
186+
31 24385 23058 12608 1
187+
31 1365 23058 12608 2
188+
31 10372 24094 6885 2
189+
31 15884 9381 10372 2
190+
31 152 24938 15884 2
191+
31 14705 9381 10372 1
192+
31 15802 14705 5777 1
193+
31 19770 9381 10372 2
194+
31 26007 17673 19770 1
195+
31 24905 17673 19770 1
196+
31 16785 24905 14586 1
197+
31 4512 17673 19770 2
198+
31 18037 17673 19770 2
199+
31 4257 9381 10372 1
200+
31 19358 4257 13772 1
201+
31 9277 4257 13772 1
202+
31 16139 4257 13772 1
203+
31 10439 4257 13772 1
204+
31 63 17673 19770 2
205+
10006 66 NA NA 1
206+
10008 92 NA NA 1
207+
10014 186 NA NA 1
208+
10027 374 NA NA 1
209+
10029 434 NA NA 1
210+
10033 333 NA NA 1
211+
10040 234 NA NA 1
212+
10045 789 NA NA 1

0 commit comments

Comments
 (0)