Merge branch 'restructure'

* restructure: (112 commits)
  minor refactoring
  minor refactoring
  changed message to eventType. Fixed expansion highlight size. Removed node only highlight.
  minor performance improvement - limited background tasks
  added debug print node count menu item
  jump to child of single collapsed node in parent hierarchy bug fixed
  jump to expand tree bug fixed
  added sql string escaping and minor refactoring
  Moved part of canvas processing to background thread, minor refactoring and code cleanup
  enhanced bookmark jump to node
  renamed classes
  removed unused classes and refactored
  removed unused classes
  Removed unused classes.
  udpated README.md
  Refactored entire project. Changed package name csgt
  removing SplitPaneToggleTest.java
  added lite mode
  changed color scheme
  fixed double graph bug
  ...

Author: OmerKhureshi

.gitignore

@@ -1,5 +1,6 @@
 # Database
 /DB/
+/Databases/
 
 # Database logs
 *.log
@@ -11,4 +12,10 @@ target/
 .idea
 
 # UI Images
-*.png
+*.png
+
+# intelliJ files
+*.iml
+
+# screenshots folder
+/Screenshots/

CSV_Before_Run_call_trace.txt

@@ -1,5 +1,6 @@
 # Java Call Stack Graph Tool
 #### A tool to generate a graphical representation of the Java call stack.
+This tool generate a tree graph for the call stack using the information in log files for you code. A specific format of log file is required for the tool to parse and process the logs. Please see _**How to generate Log files for you code**_ section below to generate log files for your own code.  <br/>
 
 ### Instruction to run tool using Maven.
 1. Download or clone the repository.<br/>
@@ -10,15 +11,27 @@
 
 ### Instruction to run tool using intelliJ.
 1. Download or clone the repository.
-2. In IntelliJ, create a new project and choose `Create Project from Existing Sources...`. Choose the cloned repository to improt all the file.
-3. Ensure that this project is recognized as a Maven project inside IntelliJ.
-6. Run the Main java class in `/src/main/java/com/application/Main.java`.
+2. In IntelliJ, create a new project and choose `Create Project from Existing Sources...`. Choose the cloned repository to import all the files.
+
+      Or.
+
+    Right click pom.xml file and click open with then choose IntelliJ.
+3. Ensure that this project is recognized as a Maven project inside IntelliJ and all the dependencies are downloaded.
+6. Run the Main java class at `<project-root>/src/main/java/com/csgt/Main.java`.
 
 ### How to use the tool?
-1. Click File -> Select Method Definition log file.
-2. Click File -> Select Call Trace file.
-3. Click Render -> Run.
-4. If you want to start over, click Run -> Reset and redo steps 1 through 3 above.
+#### For first time use:
+For the first time, the tool requires the log files that should be used to generate the graph.
+1. Click `File -> Select Method Definition log file` (⎇ + m).
+2. Click `File -> Select Call Trace file` (⎇ + c).
+3. Click `Run -> Run` (⎇ + r).
+4. To start over, click `Run -> Reset` (⎇ + ⇧ + r) and redo steps 1 to 3 above.
+
+#### For consecutive uses:
+The tool uses an embedded database to store the parsed information from the log files. Therefore for consecutive uses of the same log files, you can point to the previously generated database to generate the graph without processing the log files. The database file can be found at `<project-root>/Databases`. The file is suffixed with the time stamp.
+1. Click `File ->  Load existing database` (⎇ + d).
+2. Click ` Run -> Run` (⎇ + r)
+3. To start over, click `Run -> Reset` (⎇ + ⇧ + r).
 
-### Generate Log files.
-Call Trace and Method Definition log files can be generated by using the shell script [here](https://github.com/omersalar/LogWeaver)
+### How to generate Log files for your code?
+Call Trace and Method Definition log files can be generated by following the instructions [here](https://github.com/omersalar/LogWeaver).

CSV_Before_Run_method_definitions.txt

@@ -4,8 +4,8 @@
          xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
     <modelVersion>4.0.0</modelVersion>
 
-    <groupId>com.omer.csc895</groupId>
-    <artifactId>CallStackVisualization</artifactId>
+    <groupId>com.csgt</groupId>
+    <artifactId>CallStackGraphTool</artifactId>
     <version>1.0-SNAPSHOT</version>
 
     <build>
@@ -34,7 +34,13 @@
             <artifactId>derby</artifactId>
             <version>10.13.1.1</version>
         </dependency>
+        <!-- https://mvnrepository.com/artifact/commons-lang/commons-lang -->
+        <dependency>
+            <groupId>commons-lang</groupId>
+            <artifactId>commons-lang</artifactId>
+            <version>2.6</version>
+        </dependency>
 
     </dependencies>
 
-</project>
+</project>