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cff-version: 1.0.3
message: If you use OmegaOeroCommons, please cite both the software and the papers as indicated in the scope of each reference.
authors:
- family-names: Rigano
given-names: Alessandro
affiliation: University of Massachusetts Medical School
email: alessandro.rigano@umassmed.edu
- family-names: Strambio-De-Castillia
given-names: Caterina
affiliation: University of Massachusetts Medical School
email: caterina.strambio@umassmed.edu
orcid: https://orcid.org/0000-0002-1069-1816
title: OmegaOmeroCommons
version: v0.01.0-beta
doi: https://doi.org/10.5281/zenodo.2548938
date-released: 2019-01-24
repository: https://github.com/OmegaProject/OmegaOmeroCommons
description: The main component of OmegaOmeroCommons is Image Gateway, which implements and extends the OMERO.blitz library and other components of the OMERO API to communicate with OMERO as the main source of images.
keywords:
- java
- particle-tracking
- particle-localization
- particle-detection
- motion-analysis
- error-propagation
- data-provenance
- data-management
- classification
- trajectory-segmentation
license: GNU General Public License v.3
references:
- type: article
scope: Cite this paper every time you use the software
authors:
- family-names: Rigano
given-names: Alessandro
affiliation: University of Massachusetts Medical School
email: alessandro.rigano@umassmed.edu
- family-names: Galli
given-names: Vanni
affiliation: Scuola Universitaria Superiore della Svizzera Italiana (SUPSI)
- family-names: Clark
given-names: Jasmine M
affiliation: Nell Hodgson Woodruff School of Nursing, Emory University
- family-names: Pereira
given-names: Lara E
affiliation: Division of Sexual Transmitted Diseases Prevention, Centers for Disease Control and Prevention
- family-names: Grossi
given-names: Loris
affiliation: Scuola Universitaria Superiore della Svizzera Italiana (SUPSI)
- family-names: Luban
given-names: Jeremy
affiliation: University of Massachusetts Medical School
orcid: https://orcid.org/0000-0001-5650-4054
- family-names: Giulietti
given-names: Raffaello
affiliation: Scuola Universitaria Superiore della Svizzera Italiana (SUPSI)
- family-names: Leidi
given-names: Tiziano
affiliation: Scuola Universitaria Superiore della Svizzera Italiana (SUPSI)
- family-names: Hunter
given-names: Eric
affiliation: Emory Vaccine Center at Yerkes National Primate Research Center
- family-names: Valle
given-names: Mario
affiliation: Swiss National Supercomputing Centre
- family-names: Sbalzarini
given-names: Ivo F.
affiliation: Max Planck Institute of Molecular Cell Biology and Genetics in Dresden
- family-names: Strambio-De-Castillia
given-names: Caterina
affiliation: University of Massachusetts Medical School
email: caterina.strambio@umassmed.edu
orcid: https://orcid.org/0000-0002-1069-1816
title: "OMEGA: a software tool for the management, analysis, and dissemination of intracellular trafficking data that incorporates motion type classification and quality control"
year: 2018
journal: bioRxiv.org
doi: 10.1101/251850
url: https://doi.org/10.1101/251850