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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 895 451

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 222 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 273 137

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 32

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 58

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 188 89

Repositories

Showing 10 of 310 repositories
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    OHDSI/ETL-LambdaBuilder’s past year of commit activity
    C# 14 Apache-2.0 14 1 3 Updated Nov 15, 2024
  • PhenotypeR Public
    OHDSI/PhenotypeR’s past year of commit activity
    R 1 Apache-2.0 0 17 0 Updated Nov 15, 2024
  • OmopViewer Public
    OHDSI/OmopViewer’s past year of commit activity
    R 2 Apache-2.0 0 21 0 Updated Nov 15, 2024
  • Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    OHDSI/Vocabulary-v5.0’s past year of commit activity
    PLpgSQL 222 Unlicense 75 219 19 Updated Nov 15, 2024
  • OmopSketch Public
    OHDSI/OmopSketch’s past year of commit activity
    R 2 Apache-2.0 0 24 (2 issues need help) 1 Updated Nov 15, 2024
  • CohortSymmetry Public
    OHDSI/CohortSymmetry’s past year of commit activity
    R 1 Apache-2.0 0 22 (1 issue needs help) 0 Updated Nov 15, 2024
  • Broadsea-Dbt Public

    A Docker container for the open source Data Build Tool

    OHDSI/Broadsea-Dbt’s past year of commit activity
    Dockerfile 2 Apache-2.0 1 2 0 Updated Nov 15, 2024
  • dbt-synthea Public

    [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

    OHDSI/dbt-synthea’s past year of commit activity
    Python 16 Apache-2.0 6 20 3 Updated Nov 15, 2024
  • Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    OHDSI/Atlas’s past year of commit activity
    JavaScript 273 Apache-2.0 137 214 (1 issue needs help) 20 Updated Nov 14, 2024
  • SelfControlledCaseSeries Public

    An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.

    OHDSI/SelfControlledCaseSeries’s past year of commit activity
    R 13 8 11 0 Updated Nov 14, 2024
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