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mo_accfields.F90
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! Copyright (C) 2020 J. Schwinger, A. Moree
!
! This file is part of BLOM/iHAMOCC.
!
! BLOM is free software: you can redistribute it and/or modify it under the
! terms of the GNU Lesser General Public License as published by the Free
! Software Foundation, either version 3 of the License, or (at your option)
! any later version.
!
! BLOM is distributed in the hope that it will be useful, but WITHOUT ANY
! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
! FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for
! more details.
!
! You should have received a copy of the GNU Lesser General Public License
! along with BLOM. If not, see https://www.gnu.org/licenses/.
module mo_accfields
implicit none
private
public :: accfields
contains
subroutine accfields(kpie,kpje,kpke,pdlxp,pdlyp,pddpo,omask)
!***********************************************************************************************
!
! J.Schwinger, *UNI-RESEARCH* 2018-03-22
!
! Modified
! --------
!
! Purpose
! -------
! Accumulate fields for time-averaged output and write output
!
!***********************************************************************************************
use mod_xc, only: mnproc
use mod_dia, only: ddm
use mo_carbch, only: atm,atmflx,co2fxd,co2fxu,co3,hi,kwco2sol, &
ndepnoyflx,rivinflx,oalkflx,ocetra,omegaa,omegac,fco2,pco2,xco2, &
pco2_gex,satoxy,sedfluxo,sedfluxb,kwco2a,co2sol,pn2om, &
co213fxd,co213fxu,co214fxd,co214fxu, &
natco3,nathi,natomegaa,natomegac,natpco2,pnh3,ndepnhxflx
use mo_biomod, only: bsiflx_bot,bsiflx0100,bsiflx0500,bsiflx1000, &
bsiflx2000,bsiflx4000,calflx_bot,calflx0100,calflx0500, &
calflx1000,calflx2000,calflx4000,carflx_bot,carflx0100, &
carflx0500,carflx1000,carflx2000,carflx4000, &
dustflx_bot,dustflx0100, &
dustflx0500,dustflx1000,dustflx2000,dustflx4000, &
expoca,expoor,exposi,intdms_bac,intdms_uv,intdmsprod, &
intdnit,intnfix,intphosy,phosy3d, &
int_chbr3_prod,int_chbr3_uv,asize3d,eps3d,wnumb,wmass, &
nitr_NH4,nitr_NO2,nitr_N2O_prod,nitr_NH4_OM,nitr_NO2_OM,denit_NO3, &
denit_NO2,denit_N2O,DNRA_NO2,anmx_N2_prod,anmx_OM_prod,phosy_NH4, &
phosy_NO3,remin_aerob,remin_sulf
use mo_param_bgc, only: c14fac,re1312,re14to
use mo_bgcmean, only: domassfluxes,jalkali,jano3,jasize,jatmco2, &
jbsiflx0100,jbsiflx0500,jbsiflx1000,jbsiflx2000, &
jbsiflx4000,jbsiflx_bot,jcalc,jcalflx0100,jcalflx0500, &
jcalflx1000,jcalflx2000,jcalflx4000, &
jcalflx_bot,jcarflx0100,jcarflx0500, &
jcarflx1000,jcarflx2000,jcarflx4000,jcarflx_bot, &
jdustflx0100,jdustflx0500, &
jdustflx1000,jdustflx2000,jdustflx4000,jdustflx_bot, &
jsediffic,jsediffal,jsediffph,jsediffox, &
jburflxsso12,jburflxsssc12,jburflxssssil,jburflxssster, &
jsediffn2,jsediffno3,jsediffsi,jco2flux, &
jco2fxd,jco2fxu,jco3,jdic,jdicsat, &
jdms,jdms_bac,jdms_uv,jdmsflux, &
jdmsprod,jdoc,jdp,jeps,jexpoca, &
jexport,jexposi,jgrazer,jintdnit,jintnfix,jintphosy, &
jiralk,jirdet,jirdin,jirdip,jirdoc,jiriron, &
jiron,jirsi,jkwco2,jlvlalkali,jlvlano3,jlvlasize, &
jlvlbigd14c,jlvlbromo,jlvlcalc,jlvlcalc13, &
jlvlcfc11,jlvlcfc12,jlvlco3,jlvld13c,jlvld14c, &
jlvldic,jlvldic13,jlvldic14,jlvldicsat,jlvldoc, &
jlvldoc13,jlvleps,jlvlgrazer,jlvlgrazer13,jlvliron, &
jlvln2o,jlvlnatalkali,jlvlnatcalc,jlvlnatco3, &
jlvlnatdic,jlvlnatomegaa,jlvlnatomegac,jlvlnos, &
jlvlo2sat,jlvlomegaa,jlvlomegac,jlvlopal,jlvloxygen, &
jlvlph,jlvlphosph,jlvlphosy,jlvlphyto,jlvlphyto13, &
jlvlpoc,jlvlpoc13,jlvlprefalk,jlvlprefdic, &
jlvlprefo2,jlvlprefpo4,jlvlsf6,jlvlsilica, &
jlvlwnos,jlvlwphy,jn2flux,jn2o,jn2oflux,jn2ofx, &
jprorca,jprcaca,jsilpro,jpodiic,jpodial,jpodiph, &
jpodiox,jpodin2,jpodino3,jpodisi,jndepnoy,jndepnhx,joalk, &
jniflux,jnos,jo2flux,jo2sat,jomegaa,jomegac,jopal, &
joxflux,joxygen,jfco2,jpco2,jxco2,jpco2_gex,jkwco2sol,jco2sol, &
jph,jphosph,jphosy,jphyto,jpoc,jprefalk, &
jprefdic,jprefo2,jprefpo4,jsilica,jsrfalkali, &
jsrfano3,jsrfdic,jsrfiron,jsrfoxygen,jsrfphosph, &
jsrfphyto,jsrfsilica,jsrfph,jwnos,jwphy,jndepnoyfx, &
joalkfx,nbgc,nacc_bgc,bgcwrt,glb_inventory, &
bgct2d,acclvl,acclyr,accsrf,bgczlv, &
jatmbromo,jbromo,jbromo_prod,jbromo_uv,jbromofx,jsrfbromo, &
jcfc11,jcfc11fx,jcfc12,jcfc12fx,jsf6,jsf6fx, &
jatmc13,jatmc14,jbigd14c,jcalc13,jco213fxd,jco213fxu, &
jco214fxd,jco214fxu,jd13c,jd14c,jdic13,jdic14, &
jdoc13,jgrazer13,jphyto13,jpoc13, &
jlvlnatph,jnatalkali,jnatcalc,jnatco2fx,jnatco3, &
jnatdic,jnatomegaa,jnatomegac,jnatpco2,jnatph, &
jsrfnatalk,jsrfnatdic,jsrfnatph, &
jbursssc12,jburssso12,jburssssil,jburssster, &
jpowaal,jpowaic,jpowaox,jpowaph,jpowaph,jpowasi,jpown2, &
jpowno3,jsssc12,jssso12,jssssil,jssster,accbur,accsdm, &
jatmco2,jatmn2,jatmo2, &
jlvlanh4,jlvlano2, &
jlvl_nitr_NH4, jsrfpn2om, &
jlvl_nitr_NO2,jlvl_nitr_N2O_prod,jlvl_nitr_NH4_OM,jlvl_nitr_NO2_OM,&
jlvl_denit_NO3,jlvl_denit_NO2,jlvl_denit_N2O,jlvl_DNRA_NO2, &
jlvl_anmx_N2_prod,jlvl_anmx_OM_prod,jlvl_phosy_NH4,jlvl_phosy_NO3, &
jlvl_remin_aerob,jlvl_remin_sulf, &
jagg_ws,jdynvis,jagg_stick,jagg_stickf,jagg_dmax,jagg_avdp, &
jagg_avrhop,jagg_avdC,jagg_df,jagg_b,jagg_Vrhof,jagg_Vpor, &
jlvl_agg_ws,jlvl_dynvis,jlvl_agg_stick,jlvl_agg_stickf, &
jlvl_agg_dmax,jlvl_agg_avdp,jlvl_agg_avrhop,jlvl_agg_avdC, &
jlvl_agg_df,jlvl_agg_b,jlvl_agg_Vrhof,jlvl_agg_Vpor, &
jprefsilica,jlvlprefsilica, &
jnh3flux,janh3fx,janh4,jano2,jsrfanh4,jsrfano2,jsrfpnh3, &
jnitr_NH4,jnitr_NO2,jnitr_N2O_prod,jnitr_NH4_OM,jnitr_NO2_OM, &
jdenit_NO3,jdenit_NO2,jdenit_N2O,jDNRA_NO2,janmx_N2_prod, &
janmx_OM_prod,jphosy_NH4,jphosy_NO3,jremin_aerob,jremin_sulf, &
jpownh4,jpown2o,jpowno2,jsdm_nitr_NH4,jsdm_nitr_NO2, &
jsdm_nitr_N2O_prod,jsdm_nitr_NH4_OM,jsdm_nitr_NO2_OM, &
jsdm_denit_NO3,jsdm_denit_NO2,jsdm_denit_N2O,jsdm_DNRA_NO2, &
jsdm_anmx_N2_prod,jsdm_anmx_OM_prod,jsdm_remin_aerob, &
jsdm_remin_sulf,jsediffnh4,jsediffn2o,jsediffno2,jatmn2o,jatmnh3, &
jndepnhxfx,jshelfage,jlvlshelfage, &
jsed_mavg_prorca,jsdm_remin_sulf,jsdm_qual_a,jsdm_qual_k, &
jsdm_qual_app,jsdm_ssso12_age,jsdm_rem_aerob,jsdm_rem_denit, &
jsdm_rem_sulf
use mo_control_bgc, only: io_stdo_bgc,dtb,use_BROMO,use_AGG,use_WLIN,use_natDIC, &
use_CFC,use_sedbypass,use_cisonew,use_BOXATM,use_M4AGO, &
use_extNcycle,use_pref_tracers,use_shelfsea_res_time, &
use_sediment_quality
use mo_param1_bgc, only: ialkali,ian2o,iano3,iatmco2,iatmdms,iatmn2,iatmn2o,iatmo2, &
icalc,idet,idms,idicsat,idoc,iiron,iopal, &
ioxygen,iphosph,iphy,iprefalk,iprefdic, &
iprefpo4,iprefo2,isco212,isilica,izoo, &
irdin,irdip,irsi,iralk,iriron,irdoc,irdet,inos,iatmbromo,ibromo, &
iatmf11,iatmf12,iatmsf6,icfc11,icfc12,isf6, &
iatmc13,iatmc14,icalc13,idet13,idoc13,iphy13,isco213,isco214, &
izoo13,safediv, &
iatmnco2,inatalkali,inatcalc,inatsco212, &
ipowaal,ipowaic,ipowaox,ipowaph,ipowasi, &
ipown2,ipowno3,isssc12,issso12,issssil,issster, &
issso12,isssc12,issssil,issster,iprefsilica,iatmnh3,ianh4,iano2, &
ipownh4,ipown2o,ipowno2,ishelfage,issso12_age
use mo_sedmnt, only: powtra,sedlay,burial,prorca_mavg,sed_reactivity_a, &
sed_reactivity_k,sed_applied_reminrate,sed_rem_aerob,sed_rem_denit,&
sed_rem_sulf
use mo_vgrid, only: dp_min
use mo_inventory_bgc, only: inventory_bgc
use mo_ncwrt_bgc , only: ncwrt_bgc
use mo_ihamocc4m4ago, only: aggregate_diagnostics,kav_dp,kav_rho_p,kav_d_C,kws_agg,kdf_agg, &
kstickiness_agg,kb_agg,kstickiness_frustule,kLmax_agg,kdynvis, &
kav_rhof_V,kav_por_V
use mo_extNsediment, only: extNsed_diagnostics,ised_nitr_NH4,ised_nitr_NO2,ised_nitr_N2O_prod,&
ised_nitr_NH4_OM,ised_nitr_NO2_OM,ised_denit_NO3,ised_denit_NO2, &
ised_denit_N2O,ised_DNRA_NO2,ised_anmx_N2_prod,ised_anmx_OM_prod, &
ised_remin_aerob,ised_remin_sulf
! Arguments
integer , intent(in) :: kpie ! 1st dimension of model grid.
integer , intent(in) :: kpje ! 2nd dimension of model grid.
integer , intent(in) :: kpke ! 3rd (vertical) dimension of model grid.
real , intent(in) :: pdlxp(kpie,kpje) ! size of grid cell (1st dimension) [m].
real , intent(in) :: pdlyp(kpie,kpje) ! size of grid cell (2nd dimension) [m].
real , intent(in) :: pddpo(kpie,kpje,kpke) ! size of grid cell (3rd dimension) [m].
real , intent(in) :: omask(kpie,kpje) ! land/ocean mask
! Local variables
integer :: i,j,k,l
integer :: ind1(kpie,kpje),ind2(kpie,kpje)
real :: wghts(kpie,kpje,ddm)
real :: di12C ! cisonew
real :: d13C(kpie,kpje,kpke) ! cisonew
real :: d14C(kpie,kpje,kpke) ! cisonew
real :: bigd14C(kpie,kpje,kpke) ! cisonew
if (use_cisonew) then
! Calculation d13C, d14C and Dd14C: Delta notation for output
d13C(:,:,:)=0.
d14C(:,:,:)=0.
bigd14C(:,:,:)=0.
do k=1,kpke
do j=1,kpje
do i=1,kpie
if(omask(i,j).gt.0.5.and.pddpo(i,j,k).gt.dp_min) then
di12C=max(ocetra(i,j,k,isco212)-ocetra(i,j,k,isco213),0.)
d13C(i,j,k)=(ocetra(i,j,k,isco213)/(di12C+safediv)/re1312-1.)*1000.
d14C(i,j,k)=(ocetra(i,j,k,isco214)*c14fac/ &
(ocetra(i,j,k,isco212)+safediv)/re14to-1.)*1000.
bigd14C(i,j,k)=d14C(i,j,k)-2.*(d13C(i,j,k)+25.)*(1.+d14C(i,j,k)/1000.)
endif
enddo
enddo
enddo
endif
! Accumulated fluxes for inventory.F90. Note that these are currently not written to restart!
! Division by 2 is to account for leap-frog timestepping (but this is not exact)
do j=1,kpje
do i=1,kpie
if(omask(i,j).gt.0.5) then
! Atmosphere-ocean fluxes
bgct2d(i,j,jco2flux) = bgct2d(i,j,jco2flux) + atmflx(i,j,iatmco2)/2.0
bgct2d(i,j,jo2flux) = bgct2d(i,j,jo2flux) + atmflx(i,j,iatmo2)/2.0
bgct2d(i,j,jn2flux) = bgct2d(i,j,jn2flux) + atmflx(i,j,iatmn2)/2.0
bgct2d(i,j,jn2oflux) = bgct2d(i,j,jn2oflux) + atmflx(i,j,iatmn2o)/2.0
if (use_extNcycle) then
bgct2d(i,j,jnh3flux) = bgct2d(i,j,jnh3flux) + atmflx(i,j,iatmnh3)/2.0
bgct2d(i,j,jndepnhx) = bgct2d(i,j,jndepnhx) + ndepnhxflx(i,j)/2.0
endif
! Particle fluxes between water-column and sediment
bgct2d(i,j,jprorca) = bgct2d(i,j,jprorca) + carflx_bot(i,j)/2.0
bgct2d(i,j,jprcaca) = bgct2d(i,j,jprcaca) + calflx_bot(i,j)/2.0
bgct2d(i,j,jsilpro) = bgct2d(i,j,jsilpro) + bsiflx_bot(i,j)/2.0
if (.not. use_sedbypass) then
! Diffusive fluxes between water-column and sediment
bgct2d(i,j,jpodiic) = bgct2d(i,j,jpodiic) + sedfluxo(i,j,ipowaic)/2.0
bgct2d(i,j,jpodial) = bgct2d(i,j,jpodial) + sedfluxo(i,j,ipowaal)/2.0
bgct2d(i,j,jpodiph) = bgct2d(i,j,jpodiph) + sedfluxo(i,j,ipowaph)/2.0
bgct2d(i,j,jpodiox) = bgct2d(i,j,jpodiox) + sedfluxo(i,j,ipowaox)/2.0
bgct2d(i,j,jpodin2) = bgct2d(i,j,jpodin2) + sedfluxo(i,j,ipown2)/2.0
bgct2d(i,j,jpodino3) = bgct2d(i,j,jpodino3) + sedfluxo(i,j,ipowno3)/2.0
bgct2d(i,j,jpodisi) = bgct2d(i,j,jpodisi) + sedfluxo(i,j,ipowasi)/2.0
endif
! N-deposition, ocean alkalinization, and riverine input fluxes
bgct2d(i,j,jndepnoy) = bgct2d(i,j,jndepnoy) + ndepnoyflx(i,j)/2.0
bgct2d(i,j,joalk) = bgct2d(i,j,joalk) + oalkflx(i,j)/2.0
bgct2d(i,j,jirdin) = bgct2d(i,j,jirdin) + rivinflx(i,j,irdin)/2.0
bgct2d(i,j,jirdip) = bgct2d(i,j,jirdip) + rivinflx(i,j,irdip)/2.0
bgct2d(i,j,jirsi) = bgct2d(i,j,jirsi) + rivinflx(i,j,irsi)/2.0
bgct2d(i,j,jiralk) = bgct2d(i,j,jiralk) + rivinflx(i,j,iralk)/2.0
bgct2d(i,j,jiriron) = bgct2d(i,j,jiriron) + rivinflx(i,j,iriron)/2.0
bgct2d(i,j,jirdoc) = bgct2d(i,j,jirdoc) + rivinflx(i,j,irdoc)/2.0
bgct2d(i,j,jirdet) = bgct2d(i,j,jirdet) + rivinflx(i,j,irdet)/2.0
endif
enddo
enddo
! Accumulate atmosphere fields and fluxes
call accsrf(jatmco2,atm(1,1,iatmco2),omask,0)
if (use_BOXATM) then
call accsrf(jatmo2 ,atm(1,1,iatmo2),omask,0)
call accsrf(jatmn2 ,atm(1,1,iatmn2),omask,0)
endif
call accsrf(joxflux,atmflx(1,1,iatmo2),omask,0)
call accsrf(jniflux,atmflx(1,1,iatmn2),omask,0)
call accsrf(jn2ofx,atmflx(1,1,iatmn2o),omask,0)
call accsrf(jdmsflux,atmflx(1,1,iatmdms),omask,0)
if (use_CFC) then
call accsrf(jcfc11fx,atmflx(1,1,iatmf11),omask,0)
call accsrf(jcfc12fx,atmflx(1,1,iatmf12),omask,0)
call accsrf(jsf6fx,atmflx(1,1,iatmsf6),omask,0)
endif
if (use_natDIC) then
call accsrf(jnatco2fx,atmflx(1,1,iatmnco2),omask,0)
endif
if (use_BROMO) then
call accsrf(jatmbromo,atm(1,1,iatmbromo),omask,0)
call accsrf(jbromofx,atmflx(1,1,iatmbromo),omask,0)
endif
if (use_cisonew) then
call accsrf(jatmc13,atm(1,1,iatmc13),omask,0)
call accsrf(jatmc14,atm(1,1,iatmc14),omask,0)
endif
if (use_extNcycle) then
call accsrf(janh3fx,atmflx(1,1,iatmnh3),omask,0)
call accsrf(jatmnh3,atm(1,1,iatmnh3),omask,0)
call accsrf(jatmn2o,atm(1,1,iatmn2o),omask,0)
endif
! Save up and downward fluxes for CO2 seperately
call accsrf(jco2fxd,co2fxd,omask,0)
call accsrf(jco2fxu,co2fxu,omask,0)
if (use_cisonew) then
call accsrf(jco213fxd,co213fxd,omask,0)
call accsrf(jco213fxu,co213fxu,omask,0)
call accsrf(jco214fxd,co214fxd,omask,0)
call accsrf(jco214fxu,co214fxu,omask,0)
endif
! Accumulate 2d diagnostics
call accsrf(jfco2,fco2,omask,0)
call accsrf(jpco2,pco2,omask,0)
call accsrf(jxco2,xco2,omask,0)
call accsrf(jpco2_gex,pco2_gex,omask,0)
call accsrf(jkwco2sol,kwco2sol,omask,0)
call accsrf(jkwco2,kwco2a,omask,0)
call accsrf(jco2sol,co2sol,omask,0)
call accsrf(jsrfphosph,ocetra(1,1,1,iphosph),omask,0)
call accsrf(jsrfoxygen,ocetra(1,1,1,ioxygen),omask,0)
call accsrf(jsrfiron,ocetra(1,1,1,iiron),omask,0)
call accsrf(jsrfano3,ocetra(1,1,1,iano3),omask,0)
call accsrf(jsrfalkali,ocetra(1,1,1,ialkali),omask,0)
call accsrf(jsrfsilica,ocetra(1,1,1,isilica),omask,0)
call accsrf(jsrfdic,ocetra(1,1,1,isco212),omask,0)
call accsrf(jsrfphyto,ocetra(1,1,1,iphy),omask,0)
call accsrf(jsrfph,hi(1,1,1),omask,0)
call accsrf(jdms,ocetra(1,1,1,idms),omask,0)
call accsrf(jsrfpn2om,pn2om,omask,0)
call accsrf(jexport,expoor,omask,0)
call accsrf(jexpoca,expoca,omask,0)
call accsrf(jexposi,exposi,omask,0)
call accsrf(jdmsprod,intdmsprod,omask,0)
call accsrf(jdms_uv,intdms_uv,omask,0)
call accsrf(jdms_bac,intdms_bac,omask,0)
call accsrf(jintphosy,intphosy,omask,0)
call accsrf(jintdnit,intdnit,omask,0)
call accsrf(jintnfix,intnfix,omask,0)
if (use_natDIC) then
call accsrf(jsrfnatdic,ocetra(1,1,1,inatsco212),omask,0)
call accsrf(jsrfnatalk,ocetra(1,1,1,inatalkali),omask,0)
call accsrf(jnatpco2,natpco2,omask,0)
call accsrf(jsrfnatph,nathi(1,1,1),omask,0)
endif
if (use_BROMO) then
call accsrf(jsrfbromo,ocetra(1,1,1,ibromo),omask,0)
call accsrf(jbromo_prod,int_chbr3_prod,omask,0)
call accsrf(jbromo_uv,int_chbr3_uv,omask,0)
endif
! Accumulate fluxes due to N-deposition, ocean alkalinization
call accsrf(jndepnoyfx,ndepnoyflx,omask,0)
call accsrf(joalkfx,oalkflx,omask,0)
if (use_extNcycle) then
call accsrf(jsrfanh4,ocetra(1,1,1,ianh4),omask,0)
call accsrf(jsrfpnh3,pnh3,omask,0)
call accsrf(jsrfano2,ocetra(1,1,1,iano2),omask,0)
call accsrf(jndepnhxfx,ndepnhxflx,omask,0)
endif
! Accumulate the diagnostic mass sinking field
if( domassfluxes ) then
call accsrf(jcarflx0100,carflx0100,omask,0)
call accsrf(jbsiflx0100,bsiflx0100,omask,0)
call accsrf(jcalflx0100,calflx0100,omask,0)
call accsrf(jdustflx0100,dustflx0100,omask,0)
call accsrf(jcarflx0500,carflx0500,omask,0)
call accsrf(jbsiflx0500,bsiflx0500,omask,0)
call accsrf(jcalflx0500,calflx0500,omask,0)
call accsrf(jdustflx0500,dustflx0500,omask,0)
call accsrf(jcarflx1000,carflx1000,omask,0)
call accsrf(jbsiflx1000,bsiflx1000,omask,0)
call accsrf(jcalflx1000,calflx1000,omask,0)
call accsrf(jdustflx1000,dustflx1000,omask,0)
call accsrf(jcarflx2000,carflx2000,omask,0)
call accsrf(jbsiflx2000,bsiflx2000,omask,0)
call accsrf(jcalflx2000,calflx2000,omask,0)
call accsrf(jdustflx2000,dustflx2000,omask,0)
call accsrf(jcarflx4000,carflx4000,omask,0)
call accsrf(jbsiflx4000,bsiflx4000,omask,0)
call accsrf(jcalflx4000,calflx4000,omask,0)
call accsrf(jdustflx4000,dustflx4000,omask,0)
call accsrf(jcarflx_bot,carflx_bot,omask,0)
call accsrf(jbsiflx_bot,bsiflx_bot,omask,0)
call accsrf(jcalflx_bot,calflx_bot,omask,0)
call accsrf(jdustflx_bot,dustflx_bot,omask,0)
endif
if (.not. use_sedbypass) then
! Accumulate diffusive fluxes between water column and sediment
call accsrf(jsediffic,sedfluxo(1,1,ipowaic),omask,0)
call accsrf(jsediffal,sedfluxo(1,1,ipowaal),omask,0)
call accsrf(jsediffph,sedfluxo(1,1,ipowaph),omask,0)
call accsrf(jsediffox,sedfluxo(1,1,ipowaox),omask,0)
call accsrf(jsediffn2,sedfluxo(1,1,ipown2),omask,0)
call accsrf(jsediffno3,sedfluxo(1,1,ipowno3),omask,0)
call accsrf(jsediffsi,sedfluxo(1,1,ipowasi),omask,0)
call accsrf(jburflxsso12,sedfluxb(1,1,issso12),omask,0)
call accsrf(jburflxsssc12,sedfluxb(1,1,isssc12),omask,0)
call accsrf(jburflxssssil,sedfluxb(1,1,issssil),omask,0)
call accsrf(jburflxssster,sedfluxb(1,1,issster),omask,0)
if (use_extNcycle) then
call accsrf(jsediffnh4,sedfluxo(1,1,ipownh4),omask,0)
call accsrf(jsediffn2o,sedfluxo(1,1,ipown2o),omask,0)
call accsrf(jsediffno2,sedfluxo(1,1,ipowno2),omask,0)
endif
if (use_sediment_quality) then
call accsrf(jsed_mavg_prorca,prorca_mavg(1,1),omask,0)
endif
endif
! Accumulate layer diagnostics
call acclyr(jdp,pddpo,pddpo,0)
call acclyr(jphyto,ocetra(1,1,1,iphy),pddpo,1)
call acclyr(jgrazer,ocetra(1,1,1,izoo),pddpo,1)
call acclyr(jphosph,ocetra(1,1,1,iphosph),pddpo,1)
call acclyr(joxygen,ocetra(1,1,1,ioxygen),pddpo,1)
call acclyr(jiron,ocetra(1,1,1,iiron),pddpo,1)
call acclyr(jano3,ocetra(1,1,1,iano3),pddpo,1)
call acclyr(jalkali,ocetra(1,1,1,ialkali),pddpo,1)
call acclyr(jsilica,ocetra(1,1,1,isilica),pddpo,1)
call acclyr(jdic,ocetra(1,1,1,isco212),pddpo,1)
call acclyr(jdoc,ocetra(1,1,1,idoc),pddpo,1)
call acclyr(jpoc,ocetra(1,1,1,idet),pddpo,1)
call acclyr(jcalc,ocetra(1,1,1,icalc),pddpo,1)
call acclyr(jopal,ocetra(1,1,1,iopal),pddpo,1)
call acclyr(jn2o,ocetra(1,1,1,ian2o),pddpo,1)
call acclyr(jco3,co3,pddpo,1)
call acclyr(jph,hi,pddpo,1)
call acclyr(jomegaa,OmegaA,pddpo,1)
call acclyr(jomegac,OmegaC,pddpo,1)
call acclyr(jphosy,phosy3d,pddpo,1)
call acclyr(jo2sat,satoxy,pddpo,1)
call acclyr(jdicsat,ocetra(1,1,1,idicsat),pddpo,1)
if (use_pref_tracers) then
call acclyr(jprefo2,ocetra(1,1,1,iprefo2),pddpo,1)
call acclyr(jprefpo4,ocetra(1,1,1,iprefpo4),pddpo,1)
call acclyr(jprefsilica,ocetra(1,1,1,iprefsilica),pddpo,1)
call acclyr(jprefalk,ocetra(1,1,1,iprefalk),pddpo,1)
call acclyr(jprefdic,ocetra(1,1,1,iprefdic),pddpo,1)
endif
if (use_shelfsea_res_time) then
call acclyr(jshelfage,ocetra(1,1,1,ishelfage),pddpo,1)
endif
if (use_natDIC) then
call acclyr(jnatalkali,ocetra(1,1,1,inatalkali),pddpo,1)
call acclyr(jnatdic,ocetra(1,1,1,inatsco212),pddpo,1)
call acclyr(jnatcalc,ocetra(1,1,1,inatcalc),pddpo,1)
call acclyr(jnatco3,natco3,pddpo,1)
call acclyr(jnatph,nathi,pddpo,1)
call acclyr(jnatomegaa,natOmegaA,pddpo,1)
call acclyr(jnatomegac,natOmegaC,pddpo,1)
endif
if (use_cisonew) then
call acclyr(jdic13,ocetra(1,1,1,isco213),pddpo,1)
call acclyr(jdic14,ocetra(1,1,1,isco214),pddpo,1)
call acclyr(jd13c,d13C,pddpo,1)
call acclyr(jd14c,d14C,pddpo,1)
call acclyr(jbigd14c,bigd14C,pddpo,1)
call acclyr(jpoc13,ocetra(1,1,1,idet13),pddpo,1)
call acclyr(jdoc13,ocetra(1,1,1,idoc13),pddpo,1)
call acclyr(jcalc13,ocetra(1,1,1,icalc13),pddpo,1)
call acclyr(jphyto13,ocetra(1,1,1,iphy13),pddpo,1)
call acclyr(jgrazer13,ocetra(1,1,1,izoo13),pddpo,1)
endif
if (use_AGG) then
call acclyr(jnos,ocetra(1,1,1,inos),pddpo,1)
call acclyr(jwphy, wmass/dtb,pddpo,1)
call acclyr(jwnos, wnumb/dtb,pddpo,1)
call acclyr(jeps, eps3d, pddpo,1)
call acclyr(jasize,asize3d, pddpo,1)
endif
if (use_CFC) then
call acclyr(jcfc11,ocetra(1,1,1,icfc11),pddpo,1)
call acclyr(jcfc12,ocetra(1,1,1,icfc12),pddpo,1)
call acclyr(jsf6,ocetra(1,1,1,isf6),pddpo,1)
endif
if (use_BROMO) then
call acclyr(jbromo,ocetra(1,1,1,ibromo),pddpo,1)
endif
if (use_extNcycle) then
call acclyr(janh4,ocetra(1,1,1,ianh4),pddpo,1)
call acclyr(jano2,ocetra(1,1,1,iano2),pddpo,1)
call acclyr(jnitr_NH4,nitr_NH4,pddpo,1)
call acclyr(jnitr_NO2,nitr_NO2,pddpo,1)
call acclyr(jnitr_N2O_prod,nitr_N2O_prod,pddpo,1)
call acclyr(jnitr_NH4_OM,nitr_NH4_OM,pddpo,1)
call acclyr(jnitr_NO2_OM,nitr_NO2_OM,pddpo,1)
call acclyr(jdenit_NO3,denit_NO3,pddpo,1)
call acclyr(jdenit_NO2,denit_NO2,pddpo,1)
call acclyr(jdenit_N2O,denit_N2O,pddpo,1)
call acclyr(jDNRA_NO2,DNRA_NO2,pddpo,1)
call acclyr(janmx_N2_prod,anmx_N2_prod,pddpo,1)
call acclyr(janmx_OM_prod,anmx_OM_prod,pddpo,1)
call acclyr(jphosy_NH4,phosy_NH4,pddpo,1)
call acclyr(jphosy_NO3,phosy_NO3,pddpo,1)
call acclyr(jremin_aerob,remin_aerob,pddpo,1)
call acclyr(jremin_sulf,remin_sulf,pddpo,1)
endif
if (use_M4AGO) then
! M4AGO
call acclyr(jagg_ws,aggregate_diagnostics(1,1,1,kws_agg),pddpo,1)
call acclyr(jdynvis,aggregate_diagnostics(1,1,1,kdynvis),pddpo,1)
call acclyr(jagg_stick,aggregate_diagnostics(1,1,1,kstickiness_agg),pddpo,1)
call acclyr(jagg_stickf,aggregate_diagnostics(1,1,1,kstickiness_frustule),pddpo,1)
call acclyr(jagg_dmax,aggregate_diagnostics(1,1,1,kLmax_agg),pddpo,1)
call acclyr(jagg_avdp,aggregate_diagnostics(1,1,1,kav_dp),pddpo,1)
call acclyr(jagg_avrhop,aggregate_diagnostics(1,1,1,kav_rho_p),pddpo,1)
call acclyr(jagg_avdC,aggregate_diagnostics(1,1,1,kav_d_C),pddpo,1)
call acclyr(jagg_df,aggregate_diagnostics(1,1,1,kdf_agg),pddpo,1)
call acclyr(jagg_b,aggregate_diagnostics(1,1,1,kb_agg),pddpo,1)
call acclyr(jagg_Vrhof,aggregate_diagnostics(1,1,1,kav_rhof_V),pddpo,1)
call acclyr(jagg_Vpor,aggregate_diagnostics(1,1,1,kav_por_V),pddpo,1)
endif
! Accumulate level diagnostics
if (SUM(jlvlphyto+jlvlgrazer+jlvlphosph+jlvloxygen+jlvliron+ &
& jlvlano3+jlvlalkali+jlvlsilica+jlvldic+jlvldoc+jlvlpoc+jlvlcalc+ &
& jlvlopal+jlvln2o+jlvlco3+jlvlph+jlvlomegaa+jlvlomegac+jlvlphosy+ &
& jlvlo2sat+jlvlprefo2+jlvlprefpo4+jlvlprefalk+jlvlprefdic+ &
& jlvlprefsilica+jlvlshelfage+ &
& jlvldicsat+jlvlnatdic+jlvlnatalkali+jlvlnatcalc+jlvlnatco3+ &
& jlvlnatomegaa+jlvlnatomegac+jlvldic13+jlvldic14+jlvld13c+ &
& jlvld14c+jlvlbigd14c+jlvlpoc13+jlvldoc13+jlvlcalc13+jlvlphyto13+ &
& jlvlgrazer13+jlvlnos+jlvlwphy+jlvlwnos+jlvleps+jlvlasize+ &
& jlvlcfc11+jlvlcfc12+jlvlsf6+jlvlbromo+jlvlanh4+jlvlano2+ &
& jlvl_nitr_NH4+jlvl_nitr_NO2+jlvl_nitr_N2O_prod+jlvl_nitr_NH4_OM+&
& jlvl_nitr_NO2_OM+jlvl_denit_NO3+jlvl_denit_NO2+jlvl_denit_N2O+ &
& jlvl_DNRA_NO2+jlvl_anmx_N2_prod+jlvl_anmx_OM_prod+ &
& jlvl_phosy_NH4+jlvl_phosy_NO3+jlvl_remin_aerob+jlvl_remin_sulf+ &
& jlvl_agg_ws+jlvl_dynvis+jlvl_agg_stick+jlvl_agg_stickf+ &
& jlvl_agg_dmax+jlvl_agg_avdp+jlvl_agg_avrhop+jlvl_agg_avdC+ &
& jlvl_agg_df+jlvl_agg_b+jlvl_agg_Vrhof+jlvl_agg_Vpor &
& ) /= 0) then
do k=1,kpke
call bgczlv(pddpo,k,ind1,ind2,wghts)
call acclvl(jlvlphyto,ocetra(1,1,1,iphy),k,ind1,ind2,wghts)
call acclvl(jlvlgrazer,ocetra(1,1,1,izoo),k,ind1,ind2,wghts)
call acclvl(jlvlphosph,ocetra(1,1,1,iphosph),k,ind1,ind2,wghts)
call acclvl(jlvloxygen,ocetra(1,1,1,ioxygen),k,ind1,ind2,wghts)
call acclvl(jlvliron,ocetra(1,1,1,iiron),k,ind1,ind2,wghts)
call acclvl(jlvlano3,ocetra(1,1,1,iano3),k,ind1,ind2,wghts)
call acclvl(jlvlalkali,ocetra(1,1,1,ialkali),k,ind1,ind2,wghts)
call acclvl(jlvlsilica,ocetra(1,1,1,isilica),k,ind1,ind2,wghts)
call acclvl(jlvldic,ocetra(1,1,1,isco212),k,ind1,ind2,wghts)
call acclvl(jlvldoc,ocetra(1,1,1,idoc),k,ind1,ind2,wghts)
call acclvl(jlvlpoc,ocetra(1,1,1,idet),k,ind1,ind2,wghts)
call acclvl(jlvlcalc,ocetra(1,1,1,icalc),k,ind1,ind2,wghts)
call acclvl(jlvlopal,ocetra(1,1,1,iopal),k,ind1,ind2,wghts)
call acclvl(jlvln2o,ocetra(1,1,1,ian2o),k,ind1,ind2,wghts)
call acclvl(jlvlco3,co3,k,ind1,ind2,wghts)
call acclvl(jlvlph,hi,k,ind1,ind2,wghts)
call acclvl(jlvlomegaa,OmegaA,k,ind1,ind2,wghts)
call acclvl(jlvlomegac,OmegaC,k,ind1,ind2,wghts)
call acclvl(jlvlphosy,phosy3d,k,ind1,ind2,wghts)
call acclvl(jlvlo2sat,satoxy,k,ind1,ind2,wghts)
call acclvl(jlvldicsat,ocetra(1,1,1,idicsat),k,ind1,ind2,wghts)
if (use_pref_tracers) then
call acclvl(jlvlprefo2,ocetra(1,1,1,iprefo2),k,ind1,ind2,wghts)
call acclvl(jlvlprefpo4,ocetra(1,1,1,iprefpo4),k,ind1,ind2,wghts)
call acclvl(jlvlprefsilica,ocetra(1,1,1,iprefsilica),k,ind1,ind2,wghts)
call acclvl(jlvlprefalk,ocetra(1,1,1,iprefalk),k,ind1,ind2,wghts)
call acclvl(jlvlprefdic,ocetra(1,1,1,iprefdic),k,ind1,ind2,wghts)
endif
if (use_shelfsea_res_time) then
call acclvl(jlvlshelfage,ocetra(1,1,1,ishelfage),k,ind1,ind2,wghts)
endif
if (use_natDIC) then
call acclvl(jlvlnatdic,ocetra(1,1,1,inatsco212),k,ind1,ind2,wghts)
call acclvl(jlvlnatalkali,ocetra(1,1,1,inatalkali),k,ind1,ind2,wghts)
call acclvl(jlvlnatcalc,ocetra(1,1,1,inatcalc),k,ind1,ind2,wghts)
call acclvl(jlvlnatco3,natco3,k,ind1,ind2,wghts)
call acclvl(jlvlnatph,nathi,k,ind1,ind2,wghts)
call acclvl(jlvlnatomegaa,natOmegaA,k,ind1,ind2,wghts)
call acclvl(jlvlnatomegac,natOmegaC,k,ind1,ind2,wghts)
endif
if (use_cisonew) then
call acclvl(jlvld13c,d13C,k,ind1,ind2,wghts)
call acclvl(jlvld14c,d14C,k,ind1,ind2,wghts)
call acclvl(jlvlbigd14c,bigd14C,k,ind1,ind2,wghts)
call acclvl(jlvldic13,ocetra(1,1,1,isco213),k,ind1,ind2,wghts)
call acclvl(jlvldic14,ocetra(1,1,1,isco214),k,ind1,ind2,wghts)
call acclvl(jlvlpoc13,ocetra(1,1,1,idet13),k,ind1,ind2,wghts)
call acclvl(jlvldoc13,ocetra(1,1,1,idoc13),k,ind1,ind2,wghts)
call acclvl(jlvlcalc13,ocetra(1,1,1,icalc13),k,ind1,ind2,wghts)
call acclvl(jlvlphyto13,ocetra(1,1,1,iphy13),k,ind1,ind2,wghts)
call acclvl(jlvlgrazer13,ocetra(1,1,1,izoo13),k,ind1,ind2,wghts)
endif
if (use_AGG) then
call acclvl(jlvlnos,ocetra(1,1,1,inos),k,ind1,ind2,wghts)
call acclvl(jlvlwphy, wmass/dtb,k,ind1,ind2,wghts)
call acclvl(jlvlwnos, wnumb/dtb,k,ind1,ind2,wghts)
call acclvl(jlvleps, eps3d, k,ind1,ind2,wghts)
call acclvl(jlvlasize,asize3d, k,ind1,ind2,wghts)
endif
if (use_CFC) then
call acclvl(jlvlcfc11,ocetra(1,1,1,icfc11),k,ind1,ind2,wghts)
call acclvl(jlvlcfc12,ocetra(1,1,1,icfc12),k,ind1,ind2,wghts)
call acclvl(jlvlsf6,ocetra(1,1,1,isf6),k,ind1,ind2,wghts)
endif
if (use_BROMO) then
call acclvl(jlvlbromo,ocetra(1,1,1,ibromo),k,ind1,ind2,wghts)
endif
if (use_extNcycle) then
call acclvl(jlvlanh4,ocetra(1,1,1,ianh4),k,ind1,ind2,wghts)
call acclvl(jlvlano2,ocetra(1,1,1,iano2),k,ind1,ind2,wghts)
call acclvl(jlvl_nitr_NH4,nitr_NH4,k,ind1,ind2,wghts)
call acclvl(jlvl_nitr_NO2,nitr_NO2,k,ind1,ind2,wghts)
call acclvl(jlvl_nitr_N2O_prod,nitr_N2O_prod,k,ind1,ind2,wghts)
call acclvl(jlvl_nitr_NH4_OM,nitr_NH4_OM,k,ind1,ind2,wghts)
call acclvl(jlvl_nitr_NO2_OM,nitr_NO2_OM,k,ind1,ind2,wghts)
call acclvl(jlvl_denit_NO3,denit_NO3,k,ind1,ind2,wghts)
call acclvl(jlvl_denit_NO2,denit_NO2,k,ind1,ind2,wghts)
call acclvl(jlvl_denit_N2O,denit_N2O,k,ind1,ind2,wghts)
call acclvl(jlvl_DNRA_NO2,DNRA_NO2,k,ind1,ind2,wghts)
call acclvl(jlvl_anmx_N2_prod,anmx_N2_prod,k,ind1,ind2,wghts)
call acclvl(jlvl_anmx_OM_prod,anmx_OM_prod,k,ind1,ind2,wghts)
call acclvl(jlvl_phosy_NH4,phosy_NH4,k,ind1,ind2,wghts)
call acclvl(jlvl_phosy_NO3,phosy_NO3,k,ind1,ind2,wghts)
call acclvl(jlvl_remin_aerob,remin_aerob,k,ind1,ind2,wghts)
call acclvl(jlvl_remin_sulf,remin_sulf,k,ind1,ind2,wghts)
endif
if (use_M4AGO) then
!M4AGO
call acclvl(jlvl_agg_ws,aggregate_diagnostics(1,1,1,kws_agg),k,ind1,ind2,wghts)
call acclvl(jlvl_dynvis,aggregate_diagnostics(1,1,1,kdynvis),k,ind1,ind2,wghts)
call acclvl(jlvl_agg_stick,aggregate_diagnostics(1,1,1,kstickiness_agg),k,ind1,ind2,wghts)
call acclvl(jlvl_agg_stickf,aggregate_diagnostics(1,1,1,kstickiness_frustule),k,ind1,ind2,wghts)
call acclvl(jlvl_agg_dmax,aggregate_diagnostics(1,1,1,kLmax_agg),k,ind1,ind2,wghts)
call acclvl(jlvl_agg_avdp,aggregate_diagnostics(1,1,1,kav_dp),k,ind1,ind2,wghts)
call acclvl(jlvl_agg_avrhop,aggregate_diagnostics(1,1,1,kav_rho_p),k,ind1,ind2,wghts)
call acclvl(jlvl_agg_avdC,aggregate_diagnostics(1,1,1,kav_d_C),k,ind1,ind2,wghts)
call acclvl(jlvl_agg_df,aggregate_diagnostics(1,1,1,kdf_agg),k,ind1,ind2,wghts)
call acclvl(jlvl_agg_b,aggregate_diagnostics(1,1,1,kb_agg),k,ind1,ind2,wghts)
call acclvl(jlvl_agg_Vrhof,aggregate_diagnostics(1,1,1,kav_rhof_V),k,ind1,ind2,wghts)
call acclvl(jlvl_agg_Vpor,aggregate_diagnostics(1,1,1,kav_por_V),k,ind1,ind2,wghts)
endif
enddo
endif
if (.not. use_sedbypass) then
! Accumulate sediments
call accsdm(jpowaic,powtra(1,1,1,ipowaic))
call accsdm(jpowaal,powtra(1,1,1,ipowaal))
call accsdm(jpowaph,powtra(1,1,1,ipowaph))
call accsdm(jpowaox,powtra(1,1,1,ipowaox))
call accsdm(jpown2 ,powtra(1,1,1,ipown2) )
call accsdm(jpowno3,powtra(1,1,1,ipowno3))
call accsdm(jpowasi,powtra(1,1,1,ipowasi))
call accsdm(jssso12,sedlay(1,1,1,issso12))
call accsdm(jssssil,sedlay(1,1,1,issssil))
call accsdm(jsssc12,sedlay(1,1,1,isssc12))
call accsdm(jssster,sedlay(1,1,1,issster))
! Accumulate sediment burial
call accbur(jburssso12,burial(1,1,issso12))
call accbur(jburssssil,burial(1,1,issssil))
call accbur(jbursssc12,burial(1,1,isssc12))
call accbur(jburssster,burial(1,1,issster))
if (use_extNcycle) then
call accsdm(jpownh4,powtra(1,1,1,ipownh4))
call accsdm(jpown2o,powtra(1,1,1,ipown2o))
call accsdm(jpowno2,powtra(1,1,1,ipowno2))
call accsdm(jsdm_nitr_NH4 ,extNsed_diagnostics(1,1,1,ised_nitr_NH4))
call accsdm(jsdm_nitr_NO2 ,extNsed_diagnostics(1,1,1,ised_nitr_NO2))
call accsdm(jsdm_nitr_N2O_prod ,extNsed_diagnostics(1,1,1,ised_nitr_N2O_prod))
call accsdm(jsdm_nitr_NH4_OM ,extNsed_diagnostics(1,1,1,ised_nitr_NH4_OM))
call accsdm(jsdm_nitr_NO2_OM ,extNsed_diagnostics(1,1,1,ised_nitr_NO2_OM))
call accsdm(jsdm_denit_NO3 ,extNsed_diagnostics(1,1,1,ised_denit_NO3))
call accsdm(jsdm_denit_NO2 ,extNsed_diagnostics(1,1,1,ised_denit_NO2))
call accsdm(jsdm_denit_N2O ,extNsed_diagnostics(1,1,1,ised_denit_N2O))
call accsdm(jsdm_DNRA_NO2 ,extNsed_diagnostics(1,1,1,ised_DNRA_NO2))
call accsdm(jsdm_anmx_N2_prod ,extNsed_diagnostics(1,1,1,ised_anmx_N2_prod))
call accsdm(jsdm_anmx_OM_prod ,extNsed_diagnostics(1,1,1,ised_anmx_OM_prod))
call accsdm(jsdm_remin_aerob ,extNsed_diagnostics(1,1,1,ised_remin_aerob))
call accsdm(jsdm_remin_sulf ,extNsed_diagnostics(1,1,1,ised_remin_sulf))
else
call accsdm(jsdm_rem_aerob ,sed_rem_aerob(1,1,1))
call accsdm(jsdm_rem_denit ,sed_rem_denit(1,1,1))
call accsdm(jsdm_rem_sulf ,sed_rem_sulf(1,1,1))
endif
if (use_sediment_quality) then
call accsdm(jsdm_ssso12_age, sedlay(1,1,1,issso12_age))
call accsdm(jsdm_qual_a, sed_reactivity_a(1,1,1))
call accsdm(jsdm_qual_k, sed_reactivity_k(1,1,1))
call accsdm(jsdm_qual_app, sed_applied_reminrate(1,1,1))
endif
endif
! Write output if requested
do l=1,nbgc
nacc_bgc(l)=nacc_bgc(l)+1
if (bgcwrt(l)) then
if (GLB_INVENTORY(l).ne.0) then
call INVENTORY_BGC(kpie,kpje,kpke,pdlxp,pdlyp,pddpo,omask,l)
endif
call ncwrt_bgc(l)
nacc_bgc(l)=0
endif
enddo
atmflx=0. ! nullifying atm flux here to have zero fluxes for stepwise inventory fluxes
ndepnoyflx=0.
oalkflx=0.
rivinflx=0.
if (use_extNcycle) then
ndepnhxflx=0.
endif
end subroutine accfields
end module mo_accfields