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stacked_table.rs
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// Copyright 2021 The Jujutsu Authors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// https://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//! A persistent table of fixed-size keys to variable-size values. The keys are
//! stored in sorted order, with each key followed by an integer offset into the
//! list of values. The values are concatenated after the keys. A file may have
//! a parent file, and the parent may have its own parent, and so on. The child
//! file then represents the union of the entries.
#![allow(missing_docs)]
use std::cmp::Ordering;
use std::collections::{BTreeMap, HashMap};
use std::fs::File;
use std::io;
use std::io::{Read, Write};
use std::path::PathBuf;
use std::sync::{Arc, RwLock};
use blake2::{Blake2b512, Digest};
use tempfile::NamedTempFile;
use thiserror::Error;
use crate::file_util::persist_content_addressed_temp_file;
use crate::lock::FileLock;
pub trait TableSegment {
fn segment_num_entries(&self) -> usize;
fn segment_parent_file(&self) -> Option<&Arc<ReadonlyTable>>;
fn segment_get_value(&self, key: &[u8]) -> Option<&[u8]>;
fn segment_add_entries_to(&self, mut_table: &mut MutableTable);
fn num_entries(&self) -> usize {
if let Some(parent_file) = self.segment_parent_file() {
parent_file.num_entries() + self.segment_num_entries()
} else {
self.segment_num_entries()
}
}
fn get_value<'a>(&'a self, key: &[u8]) -> Option<&'a [u8]> {
self.segment_get_value(key)
.or_else(|| self.segment_parent_file()?.get_value(key))
}
}
pub struct ReadonlyTable {
key_size: usize,
parent_file: Option<Arc<ReadonlyTable>>,
name: String,
// Number of entries not counting the parent file
num_local_entries: usize,
// The file's entries in the raw format they're stored in on disk.
index: Vec<u8>,
values: Vec<u8>,
}
impl ReadonlyTable {
fn load_from(
file: &mut dyn Read,
store: &TableStore,
name: String,
key_size: usize,
) -> TableStoreResult<Arc<ReadonlyTable>> {
let read_u32 = |file: &mut dyn Read| -> io::Result<u32> {
let mut buf = [0; 4];
file.read_exact(&mut buf)?;
Ok(u32::from_le_bytes(buf))
};
let parent_filename_len = read_u32(file)?;
let maybe_parent_file = if parent_filename_len > 0 {
let mut parent_filename_bytes = vec![0; parent_filename_len as usize];
file.read_exact(&mut parent_filename_bytes)?;
let parent_filename = String::from_utf8(parent_filename_bytes).unwrap();
let parent_file = store.load_table(parent_filename)?;
Some(parent_file)
} else {
None
};
let num_local_entries = read_u32(file)? as usize;
let index_size = num_local_entries * ReadonlyTableIndexEntry::size(key_size);
let mut data = vec![];
file.read_to_end(&mut data)?;
let values = data.split_off(index_size);
let index = data;
Ok(Arc::new(ReadonlyTable {
key_size,
parent_file: maybe_parent_file,
name,
num_local_entries,
index,
values,
}))
}
pub fn start_mutation(self: &Arc<Self>) -> MutableTable {
MutableTable::incremental(self.clone())
}
fn segment_value_offset_by_pos(&self, pos: usize) -> usize {
if pos == self.num_local_entries {
self.values.len()
} else {
ReadonlyTableIndexEntry::new(self, pos).value_offset()
}
}
fn segment_value_by_pos(&self, pos: usize) -> &[u8] {
&self.values
[self.segment_value_offset_by_pos(pos)..self.segment_value_offset_by_pos(pos + 1)]
}
}
impl TableSegment for ReadonlyTable {
fn segment_num_entries(&self) -> usize {
self.num_local_entries
}
fn segment_parent_file(&self) -> Option<&Arc<ReadonlyTable>> {
self.parent_file.as_ref()
}
fn segment_get_value(&self, key: &[u8]) -> Option<&[u8]> {
let mut low_pos = 0;
let mut high_pos = self.num_local_entries;
loop {
if high_pos == low_pos {
return None;
}
let mid_pos = (low_pos + high_pos) / 2;
let mid_entry = ReadonlyTableIndexEntry::new(self, mid_pos);
match key.cmp(mid_entry.key()) {
Ordering::Less => {
high_pos = mid_pos;
}
Ordering::Equal => {
return Some(self.segment_value_by_pos(mid_pos));
}
Ordering::Greater => {
low_pos = mid_pos + 1;
}
}
}
}
fn segment_add_entries_to(&self, mut_table: &mut MutableTable) {
for pos in 0..self.num_local_entries {
let entry = ReadonlyTableIndexEntry::new(self, pos);
mut_table.add_entry(
entry.key().to_vec(),
self.segment_value_by_pos(pos).to_vec(),
);
}
}
}
struct ReadonlyTableIndexEntry<'table> {
data: &'table [u8],
}
impl<'table> ReadonlyTableIndexEntry<'table> {
fn new(table: &'table ReadonlyTable, pos: usize) -> Self {
let entry_size = ReadonlyTableIndexEntry::size(table.key_size);
let offset = entry_size * pos;
let data = &table.index[offset..][..entry_size];
ReadonlyTableIndexEntry { data }
}
fn size(key_size: usize) -> usize {
key_size + 4
}
fn key(&self) -> &'table [u8] {
&self.data[0..self.data.len() - 4]
}
fn value_offset(&self) -> usize {
u32::from_le_bytes(self.data[self.data.len() - 4..].try_into().unwrap()) as usize
}
}
pub struct MutableTable {
key_size: usize,
parent_file: Option<Arc<ReadonlyTable>>,
entries: BTreeMap<Vec<u8>, Vec<u8>>,
}
impl MutableTable {
fn full(key_size: usize) -> Self {
Self {
key_size,
parent_file: None,
entries: BTreeMap::new(),
}
}
fn incremental(parent_file: Arc<ReadonlyTable>) -> Self {
let key_size = parent_file.key_size;
Self {
key_size,
parent_file: Some(parent_file),
entries: BTreeMap::new(),
}
}
pub fn add_entry(&mut self, key: Vec<u8>, value: Vec<u8>) {
assert_eq!(key.len(), self.key_size);
self.entries.insert(key, value);
}
fn add_entries_from(&mut self, other: &dyn TableSegment) {
other.segment_add_entries_to(self);
}
fn merge_in(&mut self, other: &Arc<ReadonlyTable>) {
let mut maybe_own_ancestor = self.parent_file.clone();
let mut maybe_other_ancestor = Some(other.clone());
let mut files_to_add = vec![];
loop {
if maybe_other_ancestor.is_none() {
break;
}
let other_ancestor = maybe_other_ancestor.as_ref().unwrap();
if maybe_own_ancestor.is_none() {
files_to_add.push(other_ancestor.clone());
maybe_other_ancestor = other_ancestor.parent_file.clone();
continue;
}
let own_ancestor = maybe_own_ancestor.as_ref().unwrap();
if own_ancestor.name == other_ancestor.name {
break;
}
if own_ancestor.num_entries() < other_ancestor.num_entries() {
files_to_add.push(other_ancestor.clone());
maybe_other_ancestor = other_ancestor.parent_file.clone();
} else {
maybe_own_ancestor = own_ancestor.parent_file.clone();
}
}
for file in files_to_add.iter().rev() {
self.add_entries_from(file.as_ref());
}
}
fn serialize(self) -> Vec<u8> {
let mut buf = vec![];
if let Some(parent_file) = &self.parent_file {
buf.extend(u32::try_from(parent_file.name.len()).unwrap().to_le_bytes());
buf.extend_from_slice(parent_file.name.as_bytes());
} else {
buf.extend(0_u32.to_le_bytes());
}
buf.extend(u32::try_from(self.entries.len()).unwrap().to_le_bytes());
let mut value_offset = 0_u32;
for (key, value) in &self.entries {
buf.extend_from_slice(key);
buf.extend(value_offset.to_le_bytes());
value_offset += u32::try_from(value.len()).unwrap();
}
for value in self.entries.values() {
buf.extend_from_slice(value);
}
buf
}
/// If the MutableTable has more than half the entries of its parent
/// ReadonlyTable, return MutableTable with the commits from both. This
/// is done recursively, so the stack of index files has O(log n) files.
fn maybe_squash_with_ancestors(self) -> MutableTable {
let mut num_new_entries = self.entries.len();
let mut files_to_squash = vec![];
let mut maybe_parent_file = self.parent_file.clone();
let mut squashed;
loop {
match maybe_parent_file {
Some(parent_file) => {
// TODO: We should probably also squash if the parent file has less than N
// commits, regardless of how many (few) are in `self`.
if 2 * num_new_entries < parent_file.num_local_entries {
squashed = MutableTable::incremental(parent_file);
break;
}
num_new_entries += parent_file.num_local_entries;
files_to_squash.push(parent_file.clone());
maybe_parent_file = parent_file.parent_file.clone();
}
None => {
squashed = MutableTable::full(self.key_size);
break;
}
}
}
if files_to_squash.is_empty() {
return self;
}
for parent_file in files_to_squash.iter().rev() {
squashed.add_entries_from(parent_file.as_ref());
}
squashed.add_entries_from(&self);
squashed
}
fn save_in(self, store: &TableStore) -> TableStoreResult<Arc<ReadonlyTable>> {
if self.entries.is_empty() && self.parent_file.is_some() {
return Ok(self.parent_file.unwrap());
}
let buf = self.maybe_squash_with_ancestors().serialize();
let mut hasher = Blake2b512::new();
hasher.update(&buf);
let file_id_hex = hex::encode(hasher.finalize());
let file_path = store.dir.join(&file_id_hex);
let mut temp_file = NamedTempFile::new_in(&store.dir)?;
let file = temp_file.as_file_mut();
file.write_all(&buf)?;
persist_content_addressed_temp_file(temp_file, file_path)?;
ReadonlyTable::load_from(&mut buf.as_slice(), store, file_id_hex, store.key_size)
}
}
impl TableSegment for MutableTable {
fn segment_num_entries(&self) -> usize {
self.entries.len()
}
fn segment_parent_file(&self) -> Option<&Arc<ReadonlyTable>> {
self.parent_file.as_ref()
}
fn segment_get_value(&self, key: &[u8]) -> Option<&[u8]> {
self.entries.get(key).map(Vec::as_slice)
}
fn segment_add_entries_to(&self, mut_table: &mut MutableTable) {
for (key, value) in &self.entries {
mut_table.add_entry(key.clone(), value.clone());
}
}
}
#[derive(Debug, Error)]
#[error(transparent)]
pub struct TableStoreError(#[from] pub io::Error);
pub type TableStoreResult<T> = Result<T, TableStoreError>;
pub struct TableStore {
dir: PathBuf,
key_size: usize,
cached_tables: RwLock<HashMap<String, Arc<ReadonlyTable>>>,
}
impl TableStore {
pub fn init(dir: PathBuf, key_size: usize) -> Self {
std::fs::create_dir(dir.join("heads")).unwrap();
TableStore {
dir,
key_size,
cached_tables: Default::default(),
}
}
pub fn reinit(&self) {
std::fs::remove_dir_all(self.dir.join("heads")).unwrap();
TableStore::init(self.dir.clone(), self.key_size);
}
pub fn key_size(&self) -> usize {
self.key_size
}
pub fn load(dir: PathBuf, key_size: usize) -> Self {
TableStore {
dir,
key_size,
cached_tables: Default::default(),
}
}
pub fn save_table(&self, mut_table: MutableTable) -> TableStoreResult<Arc<ReadonlyTable>> {
let maybe_parent_table = mut_table.parent_file.clone();
let table = mut_table.save_in(self)?;
self.add_head(&table)?;
if let Some(parent_table) = maybe_parent_table {
if parent_table.name != table.name {
self.remove_head(&parent_table);
}
}
{
let mut locked_cache = self.cached_tables.write().unwrap();
locked_cache.insert(table.name.clone(), table.clone());
}
Ok(table)
}
fn add_head(&self, table: &Arc<ReadonlyTable>) -> std::io::Result<()> {
std::fs::write(self.dir.join("heads").join(&table.name), "")
}
fn remove_head(&self, table: &Arc<ReadonlyTable>) {
// It's fine if the old head was not found. It probably means
// that we're on a distributed file system where the locking
// doesn't work. We'll probably end up with two current
// heads. We'll detect that next time we load the table.
std::fs::remove_file(self.dir.join("heads").join(&table.name)).ok();
}
fn lock(&self) -> FileLock {
FileLock::lock(self.dir.join("lock"))
}
fn load_table(&self, name: String) -> TableStoreResult<Arc<ReadonlyTable>> {
{
let read_locked_cached = self.cached_tables.read().unwrap();
if let Some(table) = read_locked_cached.get(&name).cloned() {
return Ok(table);
}
}
let table_file_path = self.dir.join(&name);
let mut table_file = File::open(table_file_path)?;
let table = ReadonlyTable::load_from(&mut table_file, self, name, self.key_size)?;
{
let mut write_locked_cache = self.cached_tables.write().unwrap();
write_locked_cache.insert(table.name.clone(), table.clone());
}
Ok(table)
}
fn get_head_tables(&self) -> TableStoreResult<Vec<Arc<ReadonlyTable>>> {
let mut tables = vec![];
for head_entry in std::fs::read_dir(self.dir.join("heads"))? {
let head_file_name = head_entry?.file_name();
let table = self.load_table(head_file_name.to_str().unwrap().to_string())?;
tables.push(table);
}
Ok(tables)
}
pub fn get_head(&self) -> TableStoreResult<Arc<ReadonlyTable>> {
let mut tables = self.get_head_tables()?;
if tables.is_empty() {
let empty_table = MutableTable::full(self.key_size);
self.save_table(empty_table)
} else if tables.len() == 1 {
Ok(tables.pop().unwrap())
} else {
// There are multiple heads. We take a lock, then check if there are still
// multiple heads (it's likely that another process was in the process of
// deleting on of them). If there are still multiple heads, we attempt to
// merge all the tables into one. We then save that table and record the new
// head. Note that the locking isn't necessary for correctness; we
// take the lock only to avoid other concurrent processes from doing
// the same work (and producing another set of divergent heads).
let (table, _) = self.get_head_locked()?;
Ok(table)
}
}
pub fn get_head_locked(&self) -> TableStoreResult<(Arc<ReadonlyTable>, FileLock)> {
let lock = self.lock();
let mut tables = self.get_head_tables()?;
if tables.is_empty() {
let empty_table = MutableTable::full(self.key_size);
let table = self.save_table(empty_table)?;
return Ok((table, lock));
}
if tables.len() == 1 {
// Return early so we don't write a table with no changes compared to its parent
return Ok((tables.pop().unwrap(), lock));
}
let mut merged_table = MutableTable::incremental(tables[0].clone());
for other in &tables[1..] {
merged_table.merge_in(other);
}
let merged_table = self.save_table(merged_table)?;
for table in &tables[1..] {
self.remove_head(table);
}
Ok((merged_table, lock))
}
}
#[cfg(test)]
mod tests {
use test_case::test_case;
use super::*;
#[test_case(false; "memory")]
#[test_case(true; "file")]
fn stacked_table_empty(on_disk: bool) {
let temp_dir = testutils::new_temp_dir();
let store = TableStore::init(temp_dir.path().to_path_buf(), 3);
let mut_table = store.get_head().unwrap().start_mutation();
let mut _saved_table = None;
let table: &dyn TableSegment = if on_disk {
_saved_table = Some(store.save_table(mut_table).unwrap());
_saved_table.as_ref().unwrap().as_ref()
} else {
&mut_table
};
// Cannot find any keys
assert_eq!(table.get_value(b"\0\0\0"), None);
assert_eq!(table.get_value(b"aaa"), None);
assert_eq!(table.get_value(b"\xff\xff\xff"), None);
}
#[test_case(false; "memory")]
#[test_case(true; "file")]
fn stacked_table_single_key(on_disk: bool) {
let temp_dir = testutils::new_temp_dir();
let store = TableStore::init(temp_dir.path().to_path_buf(), 3);
let mut mut_table = store.get_head().unwrap().start_mutation();
mut_table.add_entry(b"abc".to_vec(), b"value".to_vec());
let mut _saved_table = None;
let table: &dyn TableSegment = if on_disk {
_saved_table = Some(store.save_table(mut_table).unwrap());
_saved_table.as_ref().unwrap().as_ref()
} else {
&mut_table
};
// Can find expected keys
assert_eq!(table.get_value(b"\0\0\0"), None);
assert_eq!(table.get_value(b"abc"), Some(b"value".as_slice()));
assert_eq!(table.get_value(b"\xff\xff\xff"), None);
}
#[test_case(false; "memory")]
#[test_case(true; "file")]
fn stacked_table_multiple_keys(on_disk: bool) {
let temp_dir = testutils::new_temp_dir();
let store = TableStore::init(temp_dir.path().to_path_buf(), 3);
let mut mut_table = store.get_head().unwrap().start_mutation();
mut_table.add_entry(b"zzz".to_vec(), b"val3".to_vec());
mut_table.add_entry(b"abc".to_vec(), b"value1".to_vec());
mut_table.add_entry(b"abd".to_vec(), b"value 2".to_vec());
let mut _saved_table = None;
let table: &dyn TableSegment = if on_disk {
_saved_table = Some(store.save_table(mut_table).unwrap());
_saved_table.as_ref().unwrap().as_ref()
} else {
&mut_table
};
// Can find expected keys
assert_eq!(table.get_value(b"\0\0\0"), None);
assert_eq!(table.get_value(b"abb"), None);
assert_eq!(table.get_value(b"abc"), Some(b"value1".as_slice()));
assert_eq!(table.get_value(b"abd"), Some(b"value 2".as_slice()));
assert_eq!(table.get_value(b"abe"), None);
assert_eq!(table.get_value(b"zzz"), Some(b"val3".as_slice()));
assert_eq!(table.get_value(b"\xff\xff\xff"), None);
}
#[test]
fn stacked_table_multiple_keys_with_parent_file() {
let temp_dir = testutils::new_temp_dir();
let store = TableStore::init(temp_dir.path().to_path_buf(), 3);
let mut mut_table = store.get_head().unwrap().start_mutation();
mut_table.add_entry(b"abd".to_vec(), b"value 2".to_vec());
mut_table.add_entry(b"abc".to_vec(), b"value1".to_vec());
mut_table.add_entry(b"zzz".to_vec(), b"val3".to_vec());
for round in 0..10 {
for i in 0..10 {
mut_table.add_entry(
format!("x{i}{round}").into_bytes(),
format!("value {i}{round}").into_bytes(),
);
}
let saved_table = store.save_table(mut_table).unwrap();
mut_table = MutableTable::incremental(saved_table);
}
// Can find expected keys
assert_eq!(mut_table.get_value(b"\0\0\0"), None);
assert_eq!(mut_table.get_value(b"x.."), None);
assert_eq!(mut_table.get_value(b"x14"), Some(b"value 14".as_slice()));
assert_eq!(mut_table.get_value(b"x41"), Some(b"value 41".as_slice()));
assert_eq!(mut_table.get_value(b"x49"), Some(b"value 49".as_slice()));
assert_eq!(mut_table.get_value(b"x94"), Some(b"value 94".as_slice()));
assert_eq!(mut_table.get_value(b"xAA"), None);
assert_eq!(mut_table.get_value(b"\xff\xff\xff"), None);
}
#[test]
fn stacked_table_merge() {
let temp_dir = testutils::new_temp_dir();
let store = TableStore::init(temp_dir.path().to_path_buf(), 3);
let mut mut_base_table = store.get_head().unwrap().start_mutation();
mut_base_table.add_entry(b"abc".to_vec(), b"value1".to_vec());
let base_table = store.save_table(mut_base_table).unwrap();
let mut mut_table1 = MutableTable::incremental(base_table.clone());
mut_table1.add_entry(b"abd".to_vec(), b"value 2".to_vec());
mut_table1.add_entry(b"zzz".to_vec(), b"val3".to_vec());
mut_table1.add_entry(b"mmm".to_vec(), b"side 1".to_vec());
let table1 = store.save_table(mut_table1).unwrap();
let mut mut_table2 = MutableTable::incremental(base_table);
mut_table2.add_entry(b"yyy".to_vec(), b"val5".to_vec());
mut_table2.add_entry(b"mmm".to_vec(), b"side 2".to_vec());
mut_table2.add_entry(b"abe".to_vec(), b"value 4".to_vec());
mut_table2.merge_in(&table1);
// Can find expected keys
assert_eq!(mut_table2.get_value(b"\0\0\0"), None);
assert_eq!(mut_table2.get_value(b"abc"), Some(b"value1".as_slice()));
assert_eq!(mut_table2.get_value(b"abd"), Some(b"value 2".as_slice()));
assert_eq!(mut_table2.get_value(b"abe"), Some(b"value 4".as_slice()));
// The caller shouldn't write two values for the same key, so it's undefined
// which wins, but let's test how it currently behaves.
assert_eq!(mut_table2.get_value(b"mmm"), Some(b"side 1".as_slice()));
assert_eq!(mut_table2.get_value(b"yyy"), Some(b"val5".as_slice()));
assert_eq!(mut_table2.get_value(b"zzz"), Some(b"val3".as_slice()));
assert_eq!(mut_table2.get_value(b"\xff\xff\xff"), None);
}
#[test]
fn stacked_table_automatic_merge() {
// Same test as above, but here we let the store do the merging on load
let temp_dir = testutils::new_temp_dir();
let store = TableStore::init(temp_dir.path().to_path_buf(), 3);
let mut mut_base_table = store.get_head().unwrap().start_mutation();
mut_base_table.add_entry(b"abc".to_vec(), b"value1".to_vec());
let base_table = store.save_table(mut_base_table).unwrap();
let mut mut_table1 = MutableTable::incremental(base_table.clone());
mut_table1.add_entry(b"abd".to_vec(), b"value 2".to_vec());
mut_table1.add_entry(b"zzz".to_vec(), b"val3".to_vec());
mut_table1.add_entry(b"mmm".to_vec(), b"side 1".to_vec());
store.save_table(mut_table1).unwrap();
let mut mut_table2 = MutableTable::incremental(base_table);
mut_table2.add_entry(b"yyy".to_vec(), b"val5".to_vec());
mut_table2.add_entry(b"mmm".to_vec(), b"side 2".to_vec());
mut_table2.add_entry(b"abe".to_vec(), b"value 4".to_vec());
let table2 = store.save_table(mut_table2).unwrap();
// The saved table does not have the keys from table1
assert_eq!(table2.get_value(b"abd"), None);
// Can find expected keys in the merged table we get from get_head()
let merged_table = store.get_head().unwrap();
assert_eq!(merged_table.get_value(b"\0\0\0"), None);
assert_eq!(merged_table.get_value(b"abc"), Some(b"value1".as_slice()));
assert_eq!(merged_table.get_value(b"abd"), Some(b"value 2".as_slice()));
assert_eq!(merged_table.get_value(b"abe"), Some(b"value 4".as_slice()));
// The caller shouldn't write two values for the same key, so it's undefined
// which wins.
let value_mmm = merged_table.get_value(b"mmm");
assert!(value_mmm == Some(b"side 1".as_slice()) || value_mmm == Some(b"side 2".as_slice()));
assert_eq!(merged_table.get_value(b"yyy"), Some(b"val5".as_slice()));
assert_eq!(merged_table.get_value(b"zzz"), Some(b"val3".as_slice()));
assert_eq!(merged_table.get_value(b"\xff\xff\xff"), None);
}
#[test]
fn stacked_table_store_save_empty() {
let temp_dir = testutils::new_temp_dir();
let store = TableStore::init(temp_dir.path().to_path_buf(), 3);
let mut mut_table = store.get_head().unwrap().start_mutation();
mut_table.add_entry(b"abc".to_vec(), b"value".to_vec());
store.save_table(mut_table).unwrap();
let mut_table = store.get_head().unwrap().start_mutation();
store.save_table(mut_table).unwrap();
// Table head shouldn't be removed on empty save
let table = store.get_head().unwrap();
assert_eq!(table.get_value(b"abc"), Some(b"value".as_slice()));
}
}