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Commits on Jul 31, 2025

• fix average_samples of not using the correct variable

  hsiaoyi0504

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  f641e6f

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Commits on Jul 8, 2025

• add an function to export se

  hsiaoyi0504

  authored
  062fb8e

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Commits on Jun 26, 2025

• add plot_glycan_feature_numbers function

  hsiaoyi0504

  authored
  e650fa3

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Commits on Jun 25, 2025

• support glycan for plot_feature_numbers

  hsiaoyi0504

  authored
  61af53f

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• Update glyco_QC.R to handle newer version of TMT-I report

  hsiaoyi0504

  authored
  c3cf025

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Commits on May 30, 2025

• improve plot_peptide_volcano function

  hsiaoyi0504

  committed
  116e277

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• internally support combined_modified_peptide.tsv

  hsiaoyi0504

  committed
  304899b

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Commits on May 28, 2025

• bump version to 1.1.0

  hsiaoyi0504

  committed
  55d8107

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• support result from new version of kinase library

  hsiaoyi0504

  committed
  b558cf8

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Commits on May 16, 2025

• handle new columns included in DIA pr_matrix

  hsiaoyi0504

  committed
  e30400c

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• speed up generating DIA peptide matrix

  hsiaoyi0504

  committed
  5e69b0f

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Commits on May 9, 2025

• minor fix of converting column names conditionally in io.R

  hsiaoyi0504

  authored
  6ad9915

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• make plot_GSEA more compatible to gsea_result data frame generated by other means

  hsiaoyi0504

  committed
  eb3c221

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Commits on Apr 22, 2025

• add links to example files

  hsiaoyi0504

  committed
  3bb4348

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Commits on Apr 4, 2025

• Fix typo of using wrong column when preparing input for the Kinase Library

  hsiaoyi0504

  authored
  0a46253

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Commits on Mar 27, 2025

• add Yamei's replicate heatmap and missing value curve functions

  hsiaoyi0504

  committed
  d301219

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Commits on Mar 11, 2025

• bump version to 1.0.5

  hsiaoyi0504

  committed
  b79551b

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• support glycan analysis

  hsiaoyi0504

  committed
  c5dd378

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Commits on Feb 17, 2025

• update version info in the document to 1.0.4

  hsiaoyi0504

  committed
  a0abd08

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• bump version to 1.0.4

  hsiaoyi0504

  authored
  d975199

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• add devtools and lintr back to renv.lock

  hsiaoyi0504

  committed
  dd90706

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Commits on Feb 16, 2025

• update renv.lock

  hsiaoyi0504

  committed
  1d4b8c5

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• fix issue of site level report in over representation test

  hsiaoyi0504

  committed
  d08b9a0

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Commits on Feb 10, 2025

• Fix version info in documentation index page

  hsiaoyi0504

  authored
  565d4a3

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• Fix version info in README.md

  hsiaoyi0504

  authored
  3e94a03

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• Update README.md

  hsiaoyi0504

  authored
  82653e4

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• Update documentation index version info

  hsiaoyi0504

  authored
  51a1d83

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• bump version to 1.0.3

  hsiaoyi0504

  committed
  7e3009b

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• update phospho TMT tutorial

  hsiaoyi0504

  committed
  ab85a56

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• fix issue of plot_feature_number

  hsiaoyi0504

  committed
  d63c17f

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• separate site-level and peptide-level, and allows to supply additional cols

  hsiaoyi0504

  committed
  ac5bc48

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• update DE function to have more options (from FragPipe-Analyst)

  hsiaoyi0504

  committed
  acf25fb

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Commits on Feb 9, 2025

• Update installation instruction in the documentation website

  hsiaoyi0504

  authored
  d4f750d

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• Update installation instruction

  hsiaoyi0504

  authored
  c4a4c92

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• bump version to 1.0.2

  hsiaoyi0504

  authored
  f193464

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