diff --git a/multiqc_ngi/multiqc_ngi.py b/multiqc_ngi/multiqc_ngi.py index 51f105d..808b543 100644 --- a/multiqc_ngi/multiqc_ngi.py +++ b/multiqc_ngi/multiqc_ngi.py @@ -232,7 +232,7 @@ def get_ngi_project_metadata(self, pid): config.title = '{}: {}'.format(pid, p_summary['project_name']) config.project_name = p_summary['project_name'] - if config.analysis_dir and ('qc_ngi' in config.analysis_dir[0] or 'qc_ngi' in os.getcwd()): + if config.analysis_dir and ('qc_ngi' in config.analysis_dir[0] or 'qc_ngi' in os.listdir()): infix = 'qc' else: infix = 'pipeline'