NAMESPACE

# Generated by roxygen2: do not edit by hand

export(Estep)
export(Mstep)
export(chooseClusterNumber)
export(choose_anchors_from_stats)
export(colorCellTypes)
export(estimatePlatformEffects)
export(fastCohorting)
export(find_anchor_cells)
export(flightpath_layout)
export(flightpath_plot)
export(getProteinParameters)
export(getRNAprofiles)
export(getSpatialContext)
export(get_anchor_stats)
export(insitutype)
export(insitutypeML)
export(lls_protein)
export(lls_rna)
export(numCores)
export(refineAnchors)
export(refineClusters)
export(spatialUpdate)
export(updateProfilesFromAnchors)
export(updateReferenceProfiles)
exportMethods(insitutype)
exportMethods(insitutypeML)
exportPattern("^[[:alpha:]]+")
import(ggplot2)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(Rcpp,evalCpp)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(data.table,data.table)
importFrom(data.table,melt)
importFrom(data.table,rbindlist)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,summarise_all)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colors)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(irlba,irlba)
importFrom(irlba,prcomp_irlba)
importFrom(lsa,cosine)
importFrom(magrittr,"%>%")
importFrom(mclust,Mclust)
importFrom(mclust,mclustBIC)
importFrom(mclust,predict.Mclust)
importFrom(methods,as)
importFrom(methods,is)
importFrom(rlang,.data)
importFrom(scales,alpha)
importFrom(spatstat.geom,closepairs)
importFrom(spatstat.geom,nncross)
importFrom(spatstat.geom,nndist)
importFrom(spatstat.geom,nnwhich)
importFrom(spatstat.geom,ppp)
importFrom(stats,dnbinom)
importFrom(stats,lm)
importFrom(stats,qnorm)
importFrom(stats,rnorm)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(umap,umap)
importFrom(utils,data)
importFrom(uwot,umap_transform)
useDynLib(InSituType, .registration = TRUE)