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exglobal_atmos_analysis.sh
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#! /usr/bin/env bash
################################################################################
#### UNIX Script Documentation Block
# . .
# Script name: exglobal_atmos_analysis.sh
# Script description: Makes a global model upper air analysis with GSI
#
# Author: Rahul Mahajan Org: NCEP/EMC Date: 2017-03-02
#
# Abstract: This script makes a global model analysis using the GSI
#
# $Id$
#
# Attributes:
# Language: POSIX shell
#
#################################################################################
# Set environment.
source "${HOMEgfs}/ush/preamble.sh"
# Directories.
pwd=$(pwd)
# Base variables
CDATE=${CDATE:-"2001010100"}
CDUMP=${CDUMP:-"gdas"}
GDUMP=${GDUMP:-"gdas"}
# Derived base variables
GDATE=$(${NDATE} -${assim_freq} ${CDATE})
BDATE=$(${NDATE} -3 ${CDATE})
PDY=$(echo ${CDATE} | cut -c1-8)
cyc=$(echo ${CDATE} | cut -c9-10)
bPDY=$(echo ${BDATE} | cut -c1-8)
bcyc=$(echo ${BDATE} | cut -c9-10)
# Utilities
export NCP=${NCP:-"/bin/cp"}
export NMV=${NMV:-"/bin/mv"}
export NLN=${NLN:-"/bin/ln -sf"}
export CHGRP_CMD=${CHGRP_CMD:-"chgrp ${group_name:-rstprod}"}
export NCLEN=${NCLEN:-${HOMEgfs}/ush/getncdimlen}
COMPRESS=${COMPRESS:-gzip}
UNCOMPRESS=${UNCOMPRESS:-gunzip}
APRUNCFP=${APRUNCFP:-""}
APRUN_GSI=${APRUN_GSI:-${APRUN:-""}}
NTHREADS_GSI=${NTHREADS_GSI:-${NTHREADS:-1}}
# Microphysics in the model; 99:ZC, 11:GFDLMP
export imp_physics=${imp_physics:-99}
lupp=${lupp:-".true."}
cnvw_option=${cnvw_option:-".false."}
# Observation usage options
cao_check=${cao_check:-".true."}
ta2tb=${ta2tb:-".true."}
# Diagnostic files options
lobsdiag_forenkf=${lobsdiag_forenkf:-".false."}
netcdf_diag=${netcdf_diag:-".true."}
binary_diag=${binary_diag:-".false."}
# IAU
DOIAU=${DOIAU:-"NO"}
export IAUFHRS=${IAUFHRS:-"6"}
# Dependent Scripts and Executables
GSIEXEC=${GSIEXEC:-${HOMEgfs}/exec/gsi.x}
export NTHREADS_CALCINC=${NTHREADS_CALCINC:-1}
export APRUN_CALCINC=${APRUN_CALCINC:-${APRUN:-""}}
export APRUN_CALCANL=${APRUN_CALCANL:-${APRUN:-""}}
export APRUN_CHGRES=${APRUN_CALCANL:-${APRUN:-""}}
export CALCINCEXEC=${CALCINCEXEC:-${HOMEgfs}/exec/calc_increment_ens.x}
export CALCINCNCEXEC=${CALCINCNCEXEC:-${HOMEgfs}/exec/calc_increment_ens_ncio.x}
export CALCANLEXEC=${CALCANLEXEC:-${HOMEgfs}/exec/calc_analysis.x}
export CHGRESNCEXEC=${CHGRESNCEXEC:-${HOMEgfs}/exec/enkf_chgres_recenter_nc.x}
export CHGRESINCEXEC=${CHGRESINCEXEC:-${HOMEgfs}/exec/interp_inc.x}
CHGRESEXEC=${CHGRESEXEC:-${HOMEgfs}/exec/enkf_chgres_recenter.x}
export NTHREADS_CHGRES=${NTHREADS_CHGRES:-24}
CALCINCPY=${CALCINCPY:-${HOMEgfs}/ush/calcinc_gfs.py}
# OPS flags
RUN=${RUN:-""}
SENDECF=${SENDECF:-"NO"}
SENDDBN=${SENDDBN:-"NO"}
RUN_GETGES=${RUN_GETGES:-"NO"}
GETGESSH=${GETGESSH:-"getges.sh"}
export gesenvir=${gesenvir:-${envir}}
# Observations
OPREFIX=${OPREFIX:-""}
OSUFFIX=${OSUFFIX:-""}
PREPQC=${PREPQC:-${COM_OBS}/${OPREFIX}prepbufr${OSUFFIX}}
PREPQCPF=${PREPQCPF:-${COM_OBS}/${OPREFIX}prepbufr.acft_profiles${OSUFFIX}}
NSSTBF=${NSSTBF:-${COM_OBS}/${OPREFIX}nsstbufr${OSUFFIX}}
SATWND=${SATWND:-${COM_OBS}/${OPREFIX}satwnd.tm00.bufr_d${OSUFFIX}}
OSCATBF=${OSCATBF:-${COM_OBS}/${OPREFIX}oscatw.tm00.bufr_d${OSUFFIX}}
RAPIDSCATBF=${RAPIDSCATBF:-${COM_OBS}/${OPREFIX}rapidscatw.tm00.bufr_d${OSUFFIX}}
GSNDBF=${GSNDBF:-${COM_OBS}/${OPREFIX}goesnd.tm00.bufr_d${OSUFFIX}}
GSNDBF1=${GSNDBF1:-${COM_OBS}/${OPREFIX}goesfv.tm00.bufr_d${OSUFFIX}}
B1HRS2=${B1HRS2:-${COM_OBS}/${OPREFIX}1bhrs2.tm00.bufr_d${OSUFFIX}}
B1MSU=${B1MSU:-${COM_OBS}/${OPREFIX}1bmsu.tm00.bufr_d${OSUFFIX}}
B1HRS3=${B1HRS3:-${COM_OBS}/${OPREFIX}1bhrs3.tm00.bufr_d${OSUFFIX}}
B1HRS4=${B1HRS4:-${COM_OBS}/${OPREFIX}1bhrs4.tm00.bufr_d${OSUFFIX}}
B1AMUA=${B1AMUA:-${COM_OBS}/${OPREFIX}1bamua.tm00.bufr_d${OSUFFIX}}
B1AMUB=${B1AMUB:-${COM_OBS}/${OPREFIX}1bamub.tm00.bufr_d${OSUFFIX}}
B1MHS=${B1MHS:-${COM_OBS}/${OPREFIX}1bmhs.tm00.bufr_d${OSUFFIX}}
ESHRS3=${ESHRS3:-${COM_OBS}/${OPREFIX}eshrs3.tm00.bufr_d${OSUFFIX}}
ESAMUA=${ESAMUA:-${COM_OBS}/${OPREFIX}esamua.tm00.bufr_d${OSUFFIX}}
ESAMUB=${ESAMUB:-${COM_OBS}/${OPREFIX}esamub.tm00.bufr_d${OSUFFIX}}
ESMHS=${ESMHS:-${COM_OBS}/${OPREFIX}esmhs.tm00.bufr_d${OSUFFIX}}
HRS3DB=${HRS3DB:-${COM_OBS}/${OPREFIX}hrs3db.tm00.bufr_d${OSUFFIX}}
AMUADB=${AMUADB:-${COM_OBS}/${OPREFIX}amuadb.tm00.bufr_d${OSUFFIX}}
AMUBDB=${AMUBDB:-${COM_OBS}/${OPREFIX}amubdb.tm00.bufr_d${OSUFFIX}}
MHSDB=${MHSDB:-${COM_OBS}/${OPREFIX}mhsdb.tm00.bufr_d${OSUFFIX}}
AIRSBF=${AIRSBF:-${COM_OBS}/${OPREFIX}airsev.tm00.bufr_d${OSUFFIX}}
IASIBF=${IASIBF:-${COM_OBS}/${OPREFIX}mtiasi.tm00.bufr_d${OSUFFIX}}
ESIASI=${ESIASI:-${COM_OBS}/${OPREFIX}esiasi.tm00.bufr_d${OSUFFIX}}
IASIDB=${IASIDB:-${COM_OBS}/${OPREFIX}iasidb.tm00.bufr_d${OSUFFIX}}
AMSREBF=${AMSREBF:-${COM_OBS}/${OPREFIX}amsre.tm00.bufr_d${OSUFFIX}}
AMSR2BF=${AMSR2BF:-${COM_OBS}/${OPREFIX}amsr2.tm00.bufr_d${OSUFFIX}}
GMI1CRBF=${GMI1CRBF:-${COM_OBS}/${OPREFIX}gmi1cr.tm00.bufr_d${OSUFFIX}} # GMI temporarily disabled due to array overflow.
SAPHIRBF=${SAPHIRBF:-${COM_OBS}/${OPREFIX}saphir.tm00.bufr_d${OSUFFIX}}
SEVIRIBF=${SEVIRIBF:-${COM_OBS}/${OPREFIX}sevcsr.tm00.bufr_d${OSUFFIX}}
AHIBF=${AHIBF:-${COM_OBS}/${OPREFIX}ahicsr.tm00.bufr_d${OSUFFIX}}
SSTVIIRS=${SSTVIIRS:-${COM_OBS}/${OPREFIX}sstvcw.tm00.bufr_d${OSUFFIX}}
ABIBF=${ABIBF:-${COM_OBS}/${OPREFIX}gsrcsr.tm00.bufr_d${OSUFFIX}}
CRISBF=${CRISBF:-${COM_OBS}/${OPREFIX}cris.tm00.bufr_d${OSUFFIX}}
ESCRIS=${ESCRIS:-${COM_OBS}/${OPREFIX}escris.tm00.bufr_d${OSUFFIX}}
CRISDB=${CRISDB:-${COM_OBS}/${OPREFIX}crisdb.tm00.bufr_d${OSUFFIX}}
CRISFSBF=${CRISFSBF:-${COM_OBS}/${OPREFIX}crisf4.tm00.bufr_d${OSUFFIX}}
ESCRISFS=${ESCRISFS:-${COM_OBS}/${OPREFIX}escrsf.tm00.bufr_d${OSUFFIX}}
CRISFSDB=${CRISFSDB:-${COM_OBS}/${OPREFIX}crsfdb.tm00.bufr_d${OSUFFIX}}
ATMSBF=${ATMSBF:-${COM_OBS}/${OPREFIX}atms.tm00.bufr_d${OSUFFIX}}
ESATMS=${ESATMS:-${COM_OBS}/${OPREFIX}esatms.tm00.bufr_d${OSUFFIX}}
ATMSDB=${ATMSDB:-${COM_OBS}/${OPREFIX}atmsdb.tm00.bufr_d${OSUFFIX}}
SSMITBF=${SSMITBF:-${COM_OBS}/${OPREFIX}ssmit.tm00.bufr_d${OSUFFIX}}
SSMISBF=${SSMISBF:-${COM_OBS}/${OPREFIX}ssmisu.tm00.bufr_d${OSUFFIX}}
SBUVBF=${SBUVBF:-${COM_OBS}/${OPREFIX}osbuv8.tm00.bufr_d${OSUFFIX}}
OMPSNPBF=${OMPSNPBF:-${COM_OBS}/${OPREFIX}ompsn8.tm00.bufr_d${OSUFFIX}}
OMPSTCBF=${OMPSTCBF:-${COM_OBS}/${OPREFIX}ompst8.tm00.bufr_d${OSUFFIX}}
OMPSLPBF=${OMPSLPBF:-${COM_OBS}/${OPREFIX}ompslp.tm00.bufr_d${OSUFFIX}}
GOMEBF=${GOMEBF:-${COM_OBS}/${OPREFIX}gome.tm00.bufr_d${OSUFFIX}}
OMIBF=${OMIBF:-${COM_OBS}/${OPREFIX}omi.tm00.bufr_d${OSUFFIX}}
MLSBF=${MLSBF:-${COM_OBS}/${OPREFIX}mls.tm00.bufr_d${OSUFFIX}}
SMIPCP=${SMIPCP:-${COM_OBS}/${OPREFIX}spssmi.tm00.bufr_d${OSUFFIX}}
TMIPCP=${TMIPCP:-${COM_OBS}/${OPREFIX}sptrmm.tm00.bufr_d${OSUFFIX}}
GPSROBF=${GPSROBF:-${COM_OBS}/${OPREFIX}gpsro.tm00.bufr_d${OSUFFIX}}
TCVITL=${TCVITL:-${COM_OBS}/${OPREFIX}syndata.tcvitals.tm00}
B1AVHAM=${B1AVHAM:-${COM_OBS}/${OPREFIX}avcsam.tm00.bufr_d${OSUFFIX}}
B1AVHPM=${B1AVHPM:-${COM_OBS}/${OPREFIX}avcspm.tm00.bufr_d${OSUFFIX}}
HDOB=${HDOB:-${COM_OBS}/${OPREFIX}hdob.tm00.bufr_d${OSUFFIX}}
# Guess files
GPREFIX=${GPREFIX:-""}
GSUFFIX=${GSUFFIX:-".nc"}
SFCG03=${SFCG03:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}sfcf003${GSUFFIX}}
SFCG04=${SFCG04:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}sfcf004${GSUFFIX}}
SFCG05=${SFCG05:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}sfcf005${GSUFFIX}}
SFCGES=${SFCGES:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}sfcf006${GSUFFIX}}
SFCG07=${SFCG07:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}sfcf007${GSUFFIX}}
SFCG08=${SFCG08:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}sfcf008${GSUFFIX}}
SFCG09=${SFCG09:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}sfcf009${GSUFFIX}}
ATMG03=${ATMG03:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf003${GSUFFIX}}
ATMG04=${ATMG04:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf004${GSUFFIX}}
ATMG05=${ATMG05:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf005${GSUFFIX}}
ATMGES=${ATMGES:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf006${GSUFFIX}}
ATMG07=${ATMG07:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf007${GSUFFIX}}
ATMG08=${ATMG08:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf008${GSUFFIX}}
ATMG09=${ATMG09:-${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf009${GSUFFIX}}
GBIAS=${GBIAS:-${COM_ATMOS_ANALYSIS_PREV}/${GPREFIX}abias}
GBIASPC=${GBIASPC:-${COM_ATMOS_ANALYSIS_PREV}/${GPREFIX}abias_pc}
GBIASAIR=${GBIASAIR:-${COM_ATMOS_ANALYSIS_PREV}/${GPREFIX}abias_air}
GRADSTAT=${GRADSTAT:-${COM_ATMOS_ANALYSIS_PREV}/${GPREFIX}radstat}
# Analysis files
export APREFIX=${APREFIX:-""}
SFCANL=${SFCANL:-${COM_ATMOS_ANALYSIS}/${APREFIX}sfcanl.nc}
DTFANL=${DTFANL:-${COM_ATMOS_ANALYSIS}/${APREFIX}dtfanl.nc}
ATMANL=${ATMANL:-${COM_ATMOS_ANALYSIS}/${APREFIX}atmanl.nc}
ABIAS=${ABIAS:-${COM_ATMOS_ANALYSIS}/${APREFIX}abias}
ABIASPC=${ABIASPC:-${COM_ATMOS_ANALYSIS}/${APREFIX}abias_pc}
ABIASAIR=${ABIASAIR:-${COM_ATMOS_ANALYSIS}/${APREFIX}abias_air}
ABIASe=${ABIASe:-${COM_ATMOS_ANALYSIS}/${APREFIX}abias_int}
RADSTAT=${RADSTAT:-${COM_ATMOS_ANALYSIS}/${APREFIX}radstat}
GSISTAT=${GSISTAT:-${COM_ATMOS_ANALYSIS}/${APREFIX}gsistat}
PCPSTAT=${PCPSTAT:-${COM_ATMOS_ANALYSIS}/${APREFIX}pcpstat}
CNVSTAT=${CNVSTAT:-${COM_ATMOS_ANALYSIS}/${APREFIX}cnvstat}
OZNSTAT=${OZNSTAT:-${COM_ATMOS_ANALYSIS}/${APREFIX}oznstat}
# Increment files
ATMINC=${ATMINC:-${COM_ATMOS_ANALYSIS}/${APREFIX}atminc.nc}
# Obs diag
RUN_SELECT=${RUN_SELECT:-"NO"}
USE_SELECT=${USE_SELECT:-"NO"}
USE_RADSTAT=${USE_RADSTAT:-"YES"}
SELECT_OBS=${SELECT_OBS:-${COM_ATMOS_ANALYSIS}/${APREFIX}obsinput}
GENDIAG=${GENDIAG:-"YES"}
DIAG_SUFFIX=${DIAG_SUFFIX:-""}
if [ ${netcdf_diag} = ".true." ] ; then
DIAG_SUFFIX="${DIAG_SUFFIX}.nc4"
fi
DIAG_COMPRESS=${DIAG_COMPRESS:-"YES"}
DIAG_TARBALL=${DIAG_TARBALL:-"YES"}
USE_CFP=${USE_CFP:-"NO"}
CFP_MP=${CFP_MP:-"NO"}
nm=""
if [ ${CFP_MP} = "YES" ]; then
nm=0
fi
DIAG_DIR=${DIAG_DIR:-${COM_ATMOS_ANALYSIS}/gsidiags}
# Set script / GSI control parameters
DOHYBVAR=${DOHYBVAR:-"NO"}
NMEM_ENKF=${NMEM_ENKF:-0}
export DONST=${DONST:-"NO"}
NST_GSI=${NST_GSI:-0}
NSTINFO=${NSTINFO:-0}
ZSEA1=${ZSEA1:-0}
ZSEA2=${ZSEA2:-0}
FAC_DTL=${FAC_DTL:-1}
FAC_TSL=${FAC_TSL:-1}
TZR_QC=${TZR_QC:-1}
USE_READIN_ANL_SFCMASK=${USE_READIN_ANL_SFCMASK:-.false.}
SMOOTH_ENKF=${SMOOTH_ENKF:-"YES"}
export DOIAU=${DOIAU:-"NO"}
DO_CALC_INCREMENT=${DO_CALC_INCREMENT:-"NO"}
DO_CALC_ANALYSIS=${DO_CALC_ANALYSIS:-"NO"}
export INCREMENTS_TO_ZERO=${INCREMENTS_TO_ZERO:-"'NONE'"}
USE_CORRELATED_OBERRS=${USE_CORRELATED_OBERRS:-"YES"}
# Get header information from Guess files
LONB=${LONB:-$(${NCLEN} ${ATMGES} grid_xt)} # get LONB
LATB=${LATB:-$(${NCLEN} ${ATMGES} grid_yt)} # get LATB
LEVS=${LEVS:-$(${NCLEN} ${ATMGES} pfull)} # get LEVS
JCAP=${JCAP:--9999} # there is no jcap in these files
[ ${JCAP} -eq -9999 -a ${LATB} -ne -9999 ] && JCAP=$((LATB-2))
[ ${LONB} -eq -9999 -o ${LATB} -eq -9999 -o ${LEVS} -eq -9999 -o ${JCAP} -eq -9999 ] && exit -9999
# Get header information from Ensemble Guess files
if [ ${DOHYBVAR} = "YES" ]; then
SFCGES_ENSMEAN=${SFCGES_ENSMEAN:-${COM_ATMOS_HISTORY_ENS_PREV}/${GPREFIX_ENS}sfcf006.ensmean.nc}
export ATMGES_ENSMEAN=${ATMGES_ENSMEAN:-${COM_ATMOS_HISTORY_ENS_PREV}/${GPREFIX_ENS}atmf006.ensmean.nc}
LONB_ENKF=${LONB_ENKF:-$(${NCLEN} ${ATMGES_ENSMEAN} grid_xt)} # get LONB_ENKF
LATB_ENKF=${LATB_ENKF:-$(${NCLEN} ${ATMGES_ENSMEAN} grid_yt)} # get LATB_ENFK
LEVS_ENKF=${LEVS_ENKF:-$(${NCLEN} ${ATMGES_ENSMEAN} pfull)} # get LATB_ENFK
JCAP_ENKF=${JCAP_ENKF:--9999} # again, no jcap in the netcdf files
NLON_ENKF=${NLON_ENKF:-${LONB_ENKF}}
NLAT_ENKF=${NLAT_ENKF:-$((${LATB_ENKF}+2))}
[ ${JCAP_ENKF} -eq -9999 -a ${LATB_ENKF} -ne -9999 ] && JCAP_ENKF=$((LATB_ENKF-2))
[ ${LONB_ENKF} -eq -9999 -o ${LATB_ENKF} -eq -9999 -o ${LEVS_ENKF} -eq -9999 -o ${JCAP_ENKF} -eq -9999 ] && exit -9999
else
LONB_ENKF=0 # just for if statement later
fi
# Get dimension information based on CASE
res=$(echo ${CASE} | cut -c2-)
JCAP_CASE=$((res*2-2))
LATB_CASE=$((res*2))
LONB_CASE=$((res*4))
# Set analysis resolution information
if [ ${DOHYBVAR} = "YES" ]; then
JCAP_A=${JCAP_A:-${JCAP_ENKF:-${JCAP}}}
LONA=${LONA:-${LONB_ENKF:-${LONB}}}
LATA=${LATA:-${LATB_ENKF:-${LATB}}}
else
JCAP_A=${JCAP_A:-${JCAP}}
LONA=${LONA:-${LONB}}
LATA=${LATA:-${LATB}}
fi
NLON_A=${NLON_A:-${LONA}}
NLAT_A=${NLAT_A:-$((${LATA}+2))}
DELTIM=${DELTIM:-$((3600/(${JCAP_A}/20)))}
# determine if writing or calculating increment
if [ ${DO_CALC_INCREMENT} = "YES" ]; then
write_fv3_increment=".false."
else
write_fv3_increment=".true."
WRITE_INCR_ZERO="incvars_to_zero= ${INCREMENTS_TO_ZERO},"
WRITE_ZERO_STRAT="incvars_zero_strat= ${INCVARS_ZERO_STRAT},"
WRITE_STRAT_EFOLD="incvars_efold= ${INCVARS_EFOLD},"
fi
# GSI Fix files
RTMFIX=${CRTM_FIX}
BERROR=${BERROR:-${FIXgsi}/Big_Endian/global_berror.l${LEVS}y${NLAT_A}.f77}
SATANGL=${SATANGL:-${FIXgsi}/global_satangbias.txt}
SATINFO=${SATINFO:-${FIXgsi}/global_satinfo.txt}
RADCLOUDINFO=${RADCLOUDINFO:-${FIXgsi}/cloudy_radiance_info.txt}
ATMSFILTER=${ATMSFILTER:-${FIXgsi}/atms_beamwidth.txt}
ANAVINFO=${ANAVINFO:-${FIXgsi}/global_anavinfo.l${LEVS}.txt}
CONVINFO=${CONVINFO:-${FIXgsi}/global_convinfo.txt}
vqcdat=${vqcdat:-${FIXgsi}/vqctp001.dat}
INSITUINFO=${INSITUINFO:-${FIXgsi}/global_insituinfo.txt}
OZINFO=${OZINFO:-${FIXgsi}/global_ozinfo.txt}
PCPINFO=${PCPINFO:-${FIXgsi}/global_pcpinfo.txt}
AEROINFO=${AEROINFO:-${FIXgsi}/global_aeroinfo.txt}
SCANINFO=${SCANINFO:-${FIXgsi}/global_scaninfo.txt}
HYBENSINFO=${HYBENSINFO:-${FIXgsi}/global_hybens_info.l${LEVS}.txt}
OBERROR=${OBERROR:-${FIXgsi}/prepobs_errtable.global}
# GSI namelist
SETUP=${SETUP:-""}
GRIDOPTS=${GRIDOPTS:-""}
BKGVERR=${BKGVERR:-""}
ANBKGERR=${ANBKGERR:-""}
JCOPTS=${JCOPTS:-""}
STRONGOPTS=${STRONGOPTS:-""}
OBSQC=${OBSQC:-""}
OBSINPUT=${OBSINPUT:-""}
SUPERRAD=${SUPERRAD:-""}
SINGLEOB=${SINGLEOB:-""}
LAGDATA=${LAGDATA:-""}
HYBRID_ENSEMBLE=${HYBRID_ENSEMBLE:-""}
RAPIDREFRESH_CLDSURF=${RAPIDREFRESH_CLDSURF:-""}
CHEM=${CHEM:-""}
NST=${NST:-""}
#uGSI Namelist parameters
lrun_subdirs=${lrun_subdirs:-".true."}
if [ ${DOHYBVAR} = "YES" ]; then
l_hyb_ens=.true.
export l4densvar=${l4densvar:-".false."}
export lwrite4danl=${lwrite4danl:-".false."}
else
l_hyb_ens=.false.
export l4densvar=.false.
export lwrite4danl=.false.
fi
# Set 4D-EnVar specific variables
if [ ${DOHYBVAR} = "YES" -a ${l4densvar} = ".true." -a ${lwrite4danl} = ".true." ]; then
ATMA03=${ATMA03:-${COM_ATMOS_ANALYSIS}/${APREFIX}atma003.nc}
ATMI03=${ATMI03:-${COM_ATMOS_ANALYSIS}/${APREFIX}atmi003.nc}
ATMA04=${ATMA04:-${COM_ATMOS_ANALYSIS}/${APREFIX}atma004.nc}
ATMI04=${ATMI04:-${COM_ATMOS_ANALYSIS}/${APREFIX}atmi004.nc}
ATMA05=${ATMA05:-${COM_ATMOS_ANALYSIS}/${APREFIX}atma005.nc}
ATMI05=${ATMI05:-${COM_ATMOS_ANALYSIS}/${APREFIX}atmi005.nc}
ATMA07=${ATMA07:-${COM_ATMOS_ANALYSIS}/${APREFIX}atma007.nc}
ATMI07=${ATMI07:-${COM_ATMOS_ANALYSIS}/${APREFIX}atmi007.nc}
ATMA08=${ATMA08:-${COM_ATMOS_ANALYSIS}/${APREFIX}atma008.nc}
ATMI08=${ATMI08:-${COM_ATMOS_ANALYSIS}/${APREFIX}atmi008.nc}
ATMA09=${ATMA09:-${COM_ATMOS_ANALYSIS}/${APREFIX}atma009.nc}
ATMI09=${ATMI09:-${COM_ATMOS_ANALYSIS}/${APREFIX}atmi009.nc}
fi
################################################################################
# Preprocessing
mkdata=NO
if [ ! -d ${DATA} ]; then
mkdata=YES
mkdir -p ${DATA}
fi
cd ${DATA} || exit 99
##############################################################
# Fixed files
${NLN} ${BERROR} berror_stats
${NLN} ${SATANGL} satbias_angle
${NLN} ${SATINFO} satinfo
${NLN} ${RADCLOUDINFO} cloudy_radiance_info.txt
${NLN} ${ATMSFILTER} atms_beamwidth.txt
${NLN} ${ANAVINFO} anavinfo
${NLN} ${CONVINFO} convinfo
${NLN} ${vqcdat} vqctp001.dat
${NLN} ${INSITUINFO} insituinfo
${NLN} ${OZINFO} ozinfo
${NLN} ${PCPINFO} pcpinfo
${NLN} ${AEROINFO} aeroinfo
${NLN} ${SCANINFO} scaninfo
${NLN} ${HYBENSINFO} hybens_info
${NLN} ${OBERROR} errtable
#If using correlated error, link to the covariance files
if [ ${USE_CORRELATED_OBERRS} == "YES" ]; then
if grep -q "Rcov" ${ANAVINFO} ; then
if ls ${FIXgsi}/Rcov* 1> /dev/null 2>&1; then
${NLN} ${FIXgsi}/Rcov* ${DATA}
echo "using correlated obs error"
else
echo "FATAL ERROR: Satellite error covariance files (Rcov) are missing."
echo "Check for the required Rcov files in " ${ANAVINFO}
exit 1
fi
else
echo "FATAL ERROR: Satellite error covariance info missing in " ${ANAVINFO}
exit 1
fi
# Correlated error utlizes mkl lapack. Found it necesary to fix the
# number of mkl threads to ensure reproducible results independent
# of the job configuration.
export MKL_NUM_THREADS=1
else
echo "not using correlated obs error"
fi
##############################################################
# CRTM Spectral and Transmittance coefficients
mkdir -p crtm_coeffs
for file in $(awk '{if($1!~"!"){print $1}}' satinfo | sort | uniq); do
${NLN} ${RTMFIX}/${file}.SpcCoeff.bin ./crtm_coeffs/${file}.SpcCoeff.bin
${NLN} ${RTMFIX}/${file}.TauCoeff.bin ./crtm_coeffs/${file}.TauCoeff.bin
done
${NLN} ${RTMFIX}/amsua_metop-a_v2.SpcCoeff.bin ./crtm_coeffs/amsua_metop-a_v2.SpcCoeff.bin
${NLN} ${RTMFIX}/Nalli.IRwater.EmisCoeff.bin ./crtm_coeffs/Nalli.IRwater.EmisCoeff.bin
${NLN} ${RTMFIX}/NPOESS.IRice.EmisCoeff.bin ./crtm_coeffs/NPOESS.IRice.EmisCoeff.bin
${NLN} ${RTMFIX}/NPOESS.IRland.EmisCoeff.bin ./crtm_coeffs/NPOESS.IRland.EmisCoeff.bin
${NLN} ${RTMFIX}/NPOESS.IRsnow.EmisCoeff.bin ./crtm_coeffs/NPOESS.IRsnow.EmisCoeff.bin
${NLN} ${RTMFIX}/NPOESS.VISice.EmisCoeff.bin ./crtm_coeffs/NPOESS.VISice.EmisCoeff.bin
${NLN} ${RTMFIX}/NPOESS.VISland.EmisCoeff.bin ./crtm_coeffs/NPOESS.VISland.EmisCoeff.bin
${NLN} ${RTMFIX}/NPOESS.VISsnow.EmisCoeff.bin ./crtm_coeffs/NPOESS.VISsnow.EmisCoeff.bin
${NLN} ${RTMFIX}/NPOESS.VISwater.EmisCoeff.bin ./crtm_coeffs/NPOESS.VISwater.EmisCoeff.bin
${NLN} ${RTMFIX}/FASTEM6.MWwater.EmisCoeff.bin ./crtm_coeffs/FASTEM6.MWwater.EmisCoeff.bin
${NLN} ${RTMFIX}/AerosolCoeff.bin ./crtm_coeffs/AerosolCoeff.bin
${NLN} ${RTMFIX}/CloudCoeff.GFDLFV3.-109z-1.bin ./crtm_coeffs/CloudCoeff.bin
##############################################################
# Observational data
${NLN} ${PREPQC} prepbufr
${NLN} ${PREPQCPF} prepbufr_profl
${NLN} ${SATWND} satwndbufr
${NLN} ${OSCATBF} oscatbufr
${NLN} ${RAPIDSCATBF} rapidscatbufr
${NLN} ${GSNDBF} gsndrbufr
${NLN} ${GSNDBF1} gsnd1bufr
${NLN} ${B1HRS2} hirs2bufr
${NLN} ${B1MSU} msubufr
${NLN} ${B1HRS3} hirs3bufr
${NLN} ${B1HRS4} hirs4bufr
${NLN} ${B1AMUA} amsuabufr
${NLN} ${B1AMUB} amsubbufr
${NLN} ${B1MHS} mhsbufr
${NLN} ${ESHRS3} hirs3bufrears
${NLN} ${ESAMUA} amsuabufrears
${NLN} ${ESAMUB} amsubbufrears
#$NLN $ESMHS mhsbufrears
${NLN} ${HRS3DB} hirs3bufr_db
${NLN} ${AMUADB} amsuabufr_db
${NLN} ${AMUBDB} amsubbufr_db
#$NLN $MHSDB mhsbufr_db
${NLN} ${SBUVBF} sbuvbufr
${NLN} ${OMPSNPBF} ompsnpbufr
${NLN} ${OMPSLPBF} ompslpbufr
${NLN} ${OMPSTCBF} ompstcbufr
${NLN} ${GOMEBF} gomebufr
${NLN} ${OMIBF} omibufr
${NLN} ${MLSBF} mlsbufr
${NLN} ${SMIPCP} ssmirrbufr
${NLN} ${TMIPCP} tmirrbufr
${NLN} ${AIRSBF} airsbufr
${NLN} ${IASIBF} iasibufr
${NLN} ${ESIASI} iasibufrears
${NLN} ${IASIDB} iasibufr_db
${NLN} ${AMSREBF} amsrebufr
${NLN} ${AMSR2BF} amsr2bufr
#${NLN} ${GMI1CRBF} gmibufr # GMI temporarily disabled due to array overflow.
${NLN} ${SAPHIRBF} saphirbufr
${NLN} ${SEVIRIBF} seviribufr
${NLN} ${CRISBF} crisbufr
${NLN} ${ESCRIS} crisbufrears
${NLN} ${CRISDB} crisbufr_db
${NLN} ${CRISFSBF} crisfsbufr
${NLN} ${ESCRISFS} crisfsbufrears
${NLN} ${CRISFSDB} crisfsbufr_db
${NLN} ${ATMSBF} atmsbufr
${NLN} ${ESATMS} atmsbufrears
${NLN} ${ATMSDB} atmsbufr_db
${NLN} ${SSMITBF} ssmitbufr
${NLN} ${SSMISBF} ssmisbufr
${NLN} ${GPSROBF} gpsrobufr
${NLN} ${TCVITL} tcvitl
${NLN} ${B1AVHAM} avhambufr
${NLN} ${B1AVHPM} avhpmbufr
${NLN} ${AHIBF} ahibufr
${NLN} ${ABIBF} abibufr
${NLN} ${HDOB} hdobbufr
${NLN} ${SSTVIIRS} sstviirs
[[ ${DONST} = "YES" ]] && ${NLN} ${NSSTBF} nsstbufr
##############################################################
# Required bias guess files
${NLN} ${GBIAS} satbias_in
${NLN} ${GBIASPC} satbias_pc
${NLN} ${GBIASAIR} aircftbias_in
${NLN} ${GRADSTAT} radstat.gdas
##############################################################
# Required model guess files
${NLN} ${ATMG03} sigf03
${NLN} ${ATMGES} sigf06
${NLN} ${ATMG09} sigf09
${NLN} ${SFCG03} sfcf03
${NLN} ${SFCGES} sfcf06
${NLN} ${SFCG09} sfcf09
[[ -f ${ATMG04} ]] && ${NLN} ${ATMG04} sigf04
[[ -f ${ATMG05} ]] && ${NLN} ${ATMG05} sigf05
[[ -f ${ATMG07} ]] && ${NLN} ${ATMG07} sigf07
[[ -f ${ATMG08} ]] && ${NLN} ${ATMG08} sigf08
[[ -f ${SFCG04} ]] && ${NLN} ${SFCG04} sfcf04
[[ -f ${SFCG05} ]] && ${NLN} ${SFCG05} sfcf05
[[ -f ${SFCG07} ]] && ${NLN} ${SFCG07} sfcf07
[[ -f ${SFCG08} ]] && ${NLN} ${SFCG08} sfcf08
if [ ${DOHYBVAR} = "YES" ]; then
# Link ensemble members
mkdir -p ensemble_data
ENKF_SUFFIX="s"
[[ ${SMOOTH_ENKF} = "NO" ]] && ENKF_SUFFIX=""
fhrs="06"
if [ ${l4densvar} = ".true." ]; then
fhrs="03 04 05 06 07 08 09"
nhr_obsbin=1
fi
for imem in $(seq 1 ${NMEM_ENKF}); do
memchar="mem$(printf %03i "${imem}")"
MEMDIR=${memchar} RUN=${GDUMP_ENS} YMD=${gPDY} HH=${gcyc} generate_com COM_ATMOS_HISTORY
for fhr in ${fhrs}; do
${NLN} ${COM_ATMOS_HISTORY}/${GPREFIX_ENS}atmf0${fhr}${ENKF_SUFFIX}.nc ./ensemble_data/sigf${fhr}_ens_${memchar}
if [ ${cnvw_option} = ".true." ]; then
${NLN} ${COM_ATMOS_HISTORY}/${GPREFIX_ENS}sfcf0${fhr}.nc ./ensemble_data/sfcf${fhr}_ens_${memchar}
fi
done
done
fi
##############################################################
# Handle inconsistent surface mask between background, ensemble and analysis grids
# This needs re-visiting in the context of NSST; especially references to JCAP*
if [ ${JCAP} -ne ${JCAP_A} ]; then
if [ ${DOHYBVAR} = "YES" -a ${JCAP_A} = ${JCAP_ENKF} ]; then
if [ -e ${SFCGES_ENSMEAN} ]; then
USE_READIN_ANL_SFCMASK=.true.
${NLN} ${SFCGES_ENSMEAN} sfcf06_anlgrid
else
echo "Warning: Inconsistent sfc mask between analysis and ensemble grids, GSI will interpolate"
fi
else
echo "Warning: Inconsistent sfc mask between analysis and background grids, GSI will interpolate"
fi
fi
##############################################################
# Diagnostic files
# if requested, link GSI diagnostic file directories for use later
if [ ${GENDIAG} = "YES" ] ; then
if [ ${lrun_subdirs} = ".true." ] ; then
if [ -d ${DIAG_DIR} ]; then
rm -rf ${DIAG_DIR}
fi
npe_m1="$((${npe_gsi}-1))"
for pe in $(seq 0 ${npe_m1}); do
pedir="dir."$(printf %04i ${pe})
mkdir -p ${DIAG_DIR}/${pedir}
${NLN} ${DIAG_DIR}/${pedir} ${pedir}
done
else
err_exit "FATAL ERROR: lrun_subdirs must be true. lrun_subdirs=${lrun_subdirs}"
fi
fi
##############################################################
# Output files
${NLN} ${ATMANL} siganl
${NLN} ${ATMINC} siginc.nc
if [ ${DOHYBVAR} = "YES" -a ${l4densvar} = ".true." -a ${lwrite4danl} = ".true." ]; then
${NLN} ${ATMA03} siga03
${NLN} ${ATMI03} sigi03.nc
${NLN} ${ATMA04} siga04
${NLN} ${ATMI04} sigi04.nc
${NLN} ${ATMA05} siga05
${NLN} ${ATMI05} sigi05.nc
${NLN} ${ATMA07} siga07
${NLN} ${ATMI07} sigi07.nc
${NLN} ${ATMA08} siga08
${NLN} ${ATMI08} sigi08.nc
${NLN} ${ATMA09} siga09
${NLN} ${ATMI09} sigi09.nc
fi
${NLN} ${ABIAS} satbias_out
${NLN} ${ABIASPC} satbias_pc.out
${NLN} ${ABIASAIR} aircftbias_out
if [ ${DONST} = "YES" ]; then
${NLN} ${DTFANL} dtfanl
fi
# If requested, link (and if tarred, de-tar obsinput.tar) into obs_input.* files
if [ ${USE_SELECT} = "YES" ]; then
rm obs_input.*
nl=$(file ${SELECT_OBS} | cut -d: -f2 | grep tar | wc -l)
if [ ${nl} -eq 1 ]; then
rm obsinput.tar
${NLN} ${SELECT_OBS} obsinput.tar
tar -xvf obsinput.tar
rm obsinput.tar
else
for filetop in $(ls ${SELECT_OBS}/obs_input.*); do
fileloc=$(basename ${filetop})
${NLN} ${filetop} ${fileloc}
done
fi
fi
##############################################################
# If requested, copy and de-tar guess radstat file
if [ ${USE_RADSTAT} = "YES" ]; then
if [ ${USE_CFP} = "YES" ]; then
[[ -f ${DATA}/unzip.sh ]] && rm ${DATA}/unzip.sh
[[ -f ${DATA}/mp_unzip.sh ]] && rm ${DATA}/mp_unzip.sh
cat > ${DATA}/unzip.sh << EOFunzip
#!/bin/sh
diag_file=\$1
diag_suffix=\$2
fname=\$(echo \$diag_file | cut -d'.' -f1)
fdate=\$(echo \$diag_file | cut -d'.' -f2)
${UNCOMPRESS} \$diag_file
fnameges=\$(echo \$fname | sed 's/_ges//g')
${NMV} \$fname.\$fdate\$diag_suffix \$fnameges
EOFunzip
chmod 755 ${DATA}/unzip.sh
fi
listdiag=$(tar xvf radstat.gdas | cut -d' ' -f2 | grep _ges)
for type in ${listdiag}; do
diag_file=$(echo ${type} | cut -d',' -f1)
if [ ${USE_CFP} = "YES" ] ; then
echo "${nm} ${DATA}/unzip.sh ${diag_file} ${DIAG_SUFFIX}" | tee -a ${DATA}/mp_unzip.sh
if [ ${CFP_MP:-"NO"} = "YES" ]; then
nm=$((nm+1))
fi
else
fname=$(echo ${diag_file} | cut -d'.' -f1)
date=$(echo ${diag_file} | cut -d'.' -f2)
${UNCOMPRESS} ${diag_file}
fnameges=$(echo ${fname}|sed 's/_ges//g')
${NMV} ${fname}.${date}${DIAG_SUFFIX} ${fnameges}
fi
done
if [ ${USE_CFP} = "YES" ] ; then
chmod 755 ${DATA}/mp_unzip.sh
ncmd=$(cat ${DATA}/mp_unzip.sh | wc -l)
if [ ${ncmd} -gt 0 ]; then
ncmd_max=$((ncmd < npe_node_max ? ncmd : npe_node_max))
APRUNCFP_UNZIP=$(eval echo ${APRUNCFP})
${APRUNCFP_UNZIP} ${DATA}/mp_unzip.sh
export err=$?; err_chk
fi
fi
fi # if [ $USE_RADSTAT = "YES" ]
##############################################################
# GSI Namelist options
if [ ${DOHYBVAR} = "YES" ]; then
HYBRID_ENSEMBLE="n_ens=${NMEM_ENKF},jcap_ens=${JCAP_ENKF},nlat_ens=${NLAT_ENKF},nlon_ens=${NLON_ENKF},jcap_ens_test=${JCAP_ENKF},${HYBRID_ENSEMBLE}"
if [ ${l4densvar} = ".true." ]; then
SETUP="niter(1)=50,niter(2)=150,niter_no_qc(1)=25,niter_no_qc(2)=0,thin4d=.true.,ens_nstarthr=3,l4densvar=${l4densvar},lwrite4danl=${lwrite4danl},${SETUP}"
JCOPTS="ljc4tlevs=.true.,${JCOPTS}"
STRONGOPTS="tlnmc_option=3,${STRONGOPTS}"
OBSQC="c_varqc=0.04,${OBSQC}"
fi
fi
if [ ${DONST} = "YES" ]; then
NST="nstinfo=${NSTINFO},fac_dtl=${FAC_DTL},fac_tsl=${FAC_TSL},zsea1=${ZSEA1},zsea2=${ZSEA2},${NST}"
fi
##############################################################
# Create global_gsi namelist
cat > gsiparm.anl << EOF
&SETUP
miter=2,
niter(1)=100,niter(2)=100,
niter_no_qc(1)=50,niter_no_qc(2)=0,
write_diag(1)=.true.,write_diag(2)=.false.,write_diag(3)=.true.,
qoption=2,
gencode=${IGEN:-0},deltim=${DELTIM},
factqmin=0.5,factqmax=0.0002,
iguess=-1,
tzr_qc=${TZR_QC},
oneobtest=.false.,retrieval=.false.,l_foto=.false.,
use_pbl=.false.,use_compress=.true.,nsig_ext=45,gpstop=50.,commgpstop=45.,commgpserrinf=1.0,
use_gfs_nemsio=.false.,use_gfs_ncio=.true.,sfcnst_comb=.true.,
use_readin_anl_sfcmask=${USE_READIN_ANL_SFCMASK},
lrun_subdirs=${lrun_subdirs},
crtm_coeffs_path='./crtm_coeffs/',
newpc4pred=.true.,adp_anglebc=.true.,angord=4,passive_bc=.true.,use_edges=.false.,
diag_precon=.true.,step_start=1.e-3,emiss_bc=.true.,nhr_obsbin=${nhr_obsbin:-3},
cwoption=3,imp_physics=${imp_physics},lupp=${lupp},cnvw_option=${cnvw_option},cao_check=${cao_check},
netcdf_diag=${netcdf_diag},binary_diag=${binary_diag},
lobsdiag_forenkf=${lobsdiag_forenkf},
write_fv3_incr=${write_fv3_increment},
nhr_anal=${IAUFHRS},
ta2tb=${ta2tb},
${WRITE_INCR_ZERO}
${WRITE_ZERO_STRAT}
${WRITE_STRAT_EFOLD}
${SETUP}
/
&GRIDOPTS
JCAP_B=${JCAP},JCAP=${JCAP_A},NLAT=${NLAT_A},NLON=${NLON_A},nsig=${LEVS},
regional=.false.,nlayers(63)=3,nlayers(64)=6,
${GRIDOPTS}
/
&BKGERR
vs=0.7,
hzscl=1.7,0.8,0.5,
hswgt=0.45,0.3,0.25,
bw=0.0,norsp=4,
bkgv_flowdep=.true.,bkgv_rewgtfct=1.5,
bkgv_write=.false.,
cwcoveqqcov=.false.,
${BKGVERR}
/
&ANBKGERR
anisotropic=.false.,
${ANBKGERR}
/
&JCOPTS
ljcdfi=.false.,alphajc=0.0,ljcpdry=.true.,bamp_jcpdry=5.0e7,
${JCOPTS}
/
&STRONGOPTS
tlnmc_option=2,nstrong=1,nvmodes_keep=8,period_max=6.,period_width=1.5,
${STRONGOPTS}
/
&OBSQC
dfact=0.75,dfact1=3.0,noiqc=.true.,oberrflg=.false.,c_varqc=0.02,
use_poq7=.true.,qc_noirjaco3_pole=.true.,vqc=.false.,nvqc=.true.,
aircraft_t_bc=.true.,biaspredt=1.0e5,upd_aircraft=.true.,cleanup_tail=.true.,
tcp_width=70.0,tcp_ermax=7.35,
${OBSQC}
/
&OBS_INPUT
dmesh(1)=145.0,dmesh(2)=150.0,dmesh(3)=100.0,dmesh(4)=50.0,time_window_max=3.0,
${OBSINPUT}
/
OBS_INPUT::
! dfile dtype dplat dsis dval dthin dsfcalc
prepbufr ps null ps 0.0 0 0
prepbufr t null t 0.0 0 0
prepbufr_profl t null t 0.0 0 0
hdobbufr t null t 0.0 0 0
prepbufr q null q 0.0 0 0
prepbufr_profl q null q 0.0 0 0
hdobbufr q null q 0.0 0 0
prepbufr pw null pw 0.0 0 0
prepbufr uv null uv 0.0 0 0
prepbufr_profl uv null uv 0.0 0 0
satwndbufr uv null uv 0.0 0 0
hdobbufr uv null uv 0.0 0 0
prepbufr spd null spd 0.0 0 0
hdobbufr spd null spd 0.0 0 0
prepbufr dw null dw 0.0 0 0
radarbufr rw null rw 0.0 0 0
nsstbufr sst nsst sst 0.0 0 0
gpsrobufr gps_bnd null gps 0.0 0 0
ssmirrbufr pcp_ssmi dmsp pcp_ssmi 0.0 -1 0
tmirrbufr pcp_tmi trmm pcp_tmi 0.0 -1 0
sbuvbufr sbuv2 n16 sbuv8_n16 0.0 0 0
sbuvbufr sbuv2 n17 sbuv8_n17 0.0 0 0
sbuvbufr sbuv2 n18 sbuv8_n18 0.0 0 0
hirs3bufr hirs3 n17 hirs3_n17 0.0 1 0
hirs4bufr hirs4 metop-a hirs4_metop-a 0.0 1 1
gimgrbufr goes_img g11 imgr_g11 0.0 1 0
gimgrbufr goes_img g12 imgr_g12 0.0 1 0
airsbufr airs aqua airs_aqua 0.0 1 1
amsuabufr amsua n15 amsua_n15 0.0 1 1
amsuabufr amsua n18 amsua_n18 0.0 1 1
amsuabufr amsua metop-a amsua_metop-a 0.0 1 1
airsbufr amsua aqua amsua_aqua 0.0 1 1
amsubbufr amsub n17 amsub_n17 0.0 1 1
mhsbufr mhs n18 mhs_n18 0.0 1 1
mhsbufr mhs metop-a mhs_metop-a 0.0 1 1
ssmitbufr ssmi f15 ssmi_f15 0.0 1 0
amsrebufr amsre_low aqua amsre_aqua 0.0 1 0
amsrebufr amsre_mid aqua amsre_aqua 0.0 1 0
amsrebufr amsre_hig aqua amsre_aqua 0.0 1 0
ssmisbufr ssmis f16 ssmis_f16 0.0 1 0
ssmisbufr ssmis f17 ssmis_f17 0.0 1 0
ssmisbufr ssmis f18 ssmis_f18 0.0 1 0
gsnd1bufr sndrd1 g12 sndrD1_g12 0.0 1 0
gsnd1bufr sndrd2 g12 sndrD2_g12 0.0 1 0
gsnd1bufr sndrd3 g12 sndrD3_g12 0.0 1 0
gsnd1bufr sndrd4 g12 sndrD4_g12 0.0 1 0
gsnd1bufr sndrd1 g11 sndrD1_g11 0.0 1 0
gsnd1bufr sndrd2 g11 sndrD2_g11 0.0 1 0
gsnd1bufr sndrd3 g11 sndrD3_g11 0.0 1 0
gsnd1bufr sndrd4 g11 sndrD4_g11 0.0 1 0
gsnd1bufr sndrd1 g13 sndrD1_g13 0.0 1 0
gsnd1bufr sndrd2 g13 sndrD2_g13 0.0 1 0
gsnd1bufr sndrd3 g13 sndrD3_g13 0.0 1 0
gsnd1bufr sndrd4 g13 sndrD4_g13 0.0 1 0
iasibufr iasi metop-a iasi_metop-a 0.0 1 1
gomebufr gome metop-a gome_metop-a 0.0 2 0
omibufr omi aura omi_aura 0.0 2 0
sbuvbufr sbuv2 n19 sbuv8_n19 0.0 0 0
hirs4bufr hirs4 n19 hirs4_n19 0.0 1 1
amsuabufr amsua n19 amsua_n19 0.0 1 1
mhsbufr mhs n19 mhs_n19 0.0 1 1
tcvitl tcp null tcp 0.0 0 0
seviribufr seviri m08 seviri_m08 0.0 1 0
seviribufr seviri m09 seviri_m09 0.0 1 0
seviribufr seviri m10 seviri_m10 0.0 1 0
seviribufr seviri m11 seviri_m11 0.0 1 0
hirs4bufr hirs4 metop-b hirs4_metop-b 0.0 1 1
amsuabufr amsua metop-b amsua_metop-b 0.0 1 1
mhsbufr mhs metop-b mhs_metop-b 0.0 1 1
iasibufr iasi metop-b iasi_metop-b 0.0 1 1
gomebufr gome metop-b gome_metop-b 0.0 2 0
atmsbufr atms npp atms_npp 0.0 1 1
atmsbufr atms n20 atms_n20 0.0 1 1
crisbufr cris npp cris_npp 0.0 1 0
crisfsbufr cris-fsr npp cris-fsr_npp 0.0 1 0
crisfsbufr cris-fsr n20 cris-fsr_n20 0.0 1 0
gsnd1bufr sndrd1 g14 sndrD1_g14 0.0 1 0
gsnd1bufr sndrd2 g14 sndrD2_g14 0.0 1 0
gsnd1bufr sndrd3 g14 sndrD3_g14 0.0 1 0
gsnd1bufr sndrd4 g14 sndrD4_g14 0.0 1 0
gsnd1bufr sndrd1 g15 sndrD1_g15 0.0 1 0
gsnd1bufr sndrd2 g15 sndrD2_g15 0.0 1 0
gsnd1bufr sndrd3 g15 sndrD3_g15 0.0 1 0
gsnd1bufr sndrd4 g15 sndrD4_g15 0.0 1 0
oscatbufr uv null uv 0.0 0 0
mlsbufr mls30 aura mls30_aura 0.0 0 0
avhambufr avhrr metop-a avhrr3_metop-a 0.0 4 0
avhpmbufr avhrr n18 avhrr3_n18 0.0 4 0
avhambufr avhrr metop-b avhrr3_metop-b 0.0 4 0
avhambufr avhrr metop-c avhrr3_metop-c 0.0 4 0
avhpmbufr avhrr n19 avhrr3_n19 0.0 4 0
amsr2bufr amsr2 gcom-w1 amsr2_gcom-w1 0.0 3 0
gmibufr gmi gpm gmi_gpm 0.0 1 0
saphirbufr saphir meghat saphir_meghat 0.0 3 0
ahibufr ahi himawari8 ahi_himawari8 0.0 1 0
abibufr abi g16 abi_g16 0.0 1 0
abibufr abi g17 abi_g17 0.0 1 0
rapidscatbufr uv null uv 0.0 0 0
ompsnpbufr ompsnp npp ompsnp_npp 0.0 0 0
ompslpbufr ompslp npp ompslp_npp 0.0 0 0
ompstcbufr ompstc8 npp ompstc8_npp 0.0 2 0
ompsnpbufr ompsnp n20 ompsnp_n20 0.0 0 0
ompstcbufr ompstc8 n20 ompstc8_n20 0.0 2 0
amsuabufr amsua metop-c amsua_metop-c 0.0 1 1
mhsbufr mhs metop-c mhs_metop-c 0.0 1 1
iasibufr iasi metop-c iasi_metop-c 0.0 1 1
sstviirs viirs-m npp viirs-m_npp 0.0 4 0
sstviirs viirs-m j1 viirs-m_j1 0.0 4 0
ahibufr ahi himawari9 ahi_himawari9 0.0 1 0
atmsbufr atms n21 atms_n21 0.0 1 1
crisfsbufr cris-fsr n21 cris-fsr_n21 0.0 1 0
sstviirs viirs-m j2 viirs-m_j2 0.0 4 0
ompsnpbufr ompsnp n21 ompsnp_n21 0.0 0 0
ompstcbufr ompstc8 n21 ompstc8_n21 0.0 2 0
gomebufr gome metop-c gome_metop-c 0.0 2 0
::
&SUPEROB_RADAR
${SUPERRAD}
/
&LAG_DATA
${LAGDATA}
/
&HYBRID_ENSEMBLE
l_hyb_ens=${l_hyb_ens},
generate_ens=.false.,
beta_s0=0.125,readin_beta=.false.,
s_ens_h=800.,s_ens_v=-0.8,readin_localization=.true.,
aniso_a_en=.false.,oz_univ_static=.false.,uv_hyb_ens=.true.,
ensemble_path='./ensemble_data/',
ens_fast_read=.true.,
${HYBRID_ENSEMBLE}
/
&RAPIDREFRESH_CLDSURF
dfi_radar_latent_heat_time_period=30.0,
${RAPIDREFRESH_CLDSURF}
/
&CHEM
${CHEM}
/
&SINGLEOB_TEST
maginnov=0.1,magoberr=0.1,oneob_type='t',
oblat=45.,oblon=180.,obpres=1000.,obdattim=${CDATE},
obhourset=0.,
${SINGLEOB}
/
&NST
nst_gsi=${NST_GSI},
${NST}
/
EOF
cat gsiparm.anl
##############################################################
# Run gsi analysis
export OMP_NUM_THREADS=${NTHREADS_GSI}
export pgm=${GSIEXEC}
. prep_step
${NCP} ${GSIEXEC} ${DATA}
${APRUN_GSI} ${DATA}/$(basename ${GSIEXEC}) 1>&1 2>&2
export err=$?; err_chk
##############################################################
# If full analysis field written, calculate analysis increment
# here before releasing FV3 forecast
if [ ${DO_CALC_INCREMENT} = "YES" ]; then
${CALCINCPY}
export err=$?; err_chk
fi
##############################################################
# For eupd
if [ -s satbias_out.int ]; then
${NCP} satbias_out.int ${ABIASe}
else
${NCP} satbias_in ${ABIASe}
fi
# Cat runtime output files.
cat fort.2* > ${GSISTAT}
# If requested, create obsinput tarball from obs_input.* files
if [ ${RUN_SELECT} = "YES" ]; then
echo $(date) START tar obs_input >&2
[[ -s obsinput.tar ]] && rm obsinput.tar
${NLN} ${SELECT_OBS} obsinput.tar
${CHGRP_CMD} obs_input.*
tar -cvf obsinput.tar obs_input.*
chmod 750 ${SELECT_OBS}
${CHGRP_CMD} ${SELECT_OBS}
rm obsinput.tar
echo $(date) END tar obs_input >&2
fi
################################################################################
# Send alerts
if [ ${SENDDBN} = "YES" ]; then
if [ ${RUN} = "gfs" ]; then
${DBNROOT}/bin/dbn_alert MODEL GFS_abias ${job} ${ABIAS}
fi
fi
################################################################################
# Postprocessing
cd ${pwd}
[[ ${mkdata} = "YES" ]] && rm -rf ${DATA}
##############################################################
# Add this statement to release the forecast job once the
# atmopsheric analysis and updated surface RESTARTS are
# available. Do not release forecast when RUN=enkf
##############################################################
if [ ${SENDECF} = "YES" -a "${RUN}" != "enkf" ]; then
ecflow_client --event release_fcst
fi
echo "${CDUMP} ${CDATE} atminc done at $(date)" > ${COM_ATMOS_ANALYSIS}/${APREFIX}loginc.txt
################################################################################
exit ${err}
################################################################################