A Python package for analyses of Boolean and semi-quantitative Boolean networks.
To install:
git clone https://github.com/NIB-SI/BoolDog.git
cd BoolDoG
pip install .To remove:
pip uninstall booldog- numpy
- xmltodict
- scipy
- python-igraph
- matplotlib
- pygraphviz (optional)
- PyBoolNet
- networkx
See test-notebook.ipynb.
import booldog
g = booldog.RegulatoryNetwork("./examples/Athaliana.graphml", "graphml")
g.continuous_simulation(t_max=30, gamma=1, h=10)